Gene Dgeo_0952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDgeo_0952 
Symbol 
ID4058650 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDeinococcus geothermalis DSM 11300 
KingdomBacteria 
Replicon accessionNC_008025 
Strand
Start bp1018784 
End bp1019560 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content70% 
IMG OID641229971 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_604422 
Protein GI94985058 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0412678 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.59225 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTCCC AGGAACATCA GGAAGCCCGC GTCGCCCTCG TCACGGGCGG GAGCAGCGGC 
ATCGGCCTCG CCATCGCGCA GCGGCTGCAG GCCGACGGGT TGAAGGTGGC CGTGCTGGAC
CTCGACCGCC CGCAGGCACG CGAGGGGGCA GAGCAGAATG GCTTCACCTT TATCGGCGCC
GACCTTTCCC GCCGCGAGGA CTGCCGCCGC GCAGTGGAGG AAACGGTGGC CGCGCTGGGA
GGCTTGGACG TGCTGGTCAA CAACGCGGGC TTTCAGCACA TCGACCCCAT CGCGGACTTT
CCCGAAGACA CCTGGGACAG CATGCTGCGC GTGATGCTGA CCGCGCCGTT TTTGCTCACC
AAGTACGCCT GGGGGTACCT CACGCGCTCG GGGCAGGGCC GCGTTGTGAA TATCGCCTCC
ATCCACGGGC AGGTTGCCAG CCCCTTCAAG AGTGCCTATA TCAGCGCCAA GCACGGGCTG
ATCGGCCTGA CGCGCACGGC GGCGCTGGAG GCGGGCGAGC AGGGCTTCAC CGTGAACGCG
ATCTGCCCGG GCTACGTCCG CACGCCCCTG GTGGAGGGCC AGATCGCGGA CCAGGCCCGC
ACCCGCGGCC TCAGCGAGCA GGAGGTCGAG CAGCGGGTGA TGCTCGAACC CGCCGCCATC
AAGCGGCTGC TGGCGCCGGA GGACGTGGCG GCCCTCGCGA GCTACGTGGT CAGCCCGGCC
GCCTGGGGCA TGACGGGCGC GGTGCTGGAC CTCGACCTGG GGTGGACGGC GCGCTAA
 
Protein sequence
MPSQEHQEAR VALVTGGSSG IGLAIAQRLQ ADGLKVAVLD LDRPQAREGA EQNGFTFIGA 
DLSRREDCRR AVEETVAALG GLDVLVNNAG FQHIDPIADF PEDTWDSMLR VMLTAPFLLT
KYAWGYLTRS GQGRVVNIAS IHGQVASPFK SAYISAKHGL IGLTRTAALE AGEQGFTVNA
ICPGYVRTPL VEGQIADQAR TRGLSEQEVE QRVMLEPAAI KRLLAPEDVA ALASYVVSPA
AWGMTGAVLD LDLGWTAR