| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dgeo_0636 |
|---|
| Symbol | rpoB |
|---|
| ID | 4057601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Deinococcus geothermalis DSM 11300 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008025 |
|---|
| Strand | - |
|---|
| Start bp | 689946 |
|---|
| End bp | 693404 |
|---|
| Gene Length | 3459 bp |
|---|
| Protein Length | 1152 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641229651 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_604107 |
|---|
| Protein GI | 94984743 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTTA CCGATCAGAA GCCACGCATT GAGCGTTTTG GTGAGATCAC CGAAGTGATC
CCGCTGCCCA ACCTGACCGA AGTGCAGGTG AACTCCTTCA AGGCGTTCCT GCAAGCCGAT
AAGGCGCCCG ACGAGCGCGA CGACACCGGA TTGCAAAGTG CCTTCCGCGA AGTTTTTCCG
ATTGACGAGA CCGAGAAGGG CCGCTCGACT GGGCTGGTGC TGGACTTCTT GGAATACCGC
CTGGGCGAAC CGCCCTACAC GCCGGAAGAA TGCCGCGAAA AGGACCTGAC CTATCAGGCG
CCGCTGTATG CCAAGCTTCA GCTGATCCAT AAGGACAGCG GCCTGATCAA GGAAGACCAG
GTGTTTCTGG GCGACCTGCC GCTGATGACG GATGATGGCT CCTTTGTGAT CAACGGGGCT
GACCGCGTGG TGATCAGCCA GATTCACCGC TCGCCTGGCG TGTACTTCAC GTCCTCCTAT
AAGGGCATCA AGAAGATGTA CACCGCCGCC ATCATCCCCA TGCCCAAGCG CGGCCCTTGG
ATTGAGCTGG AGTTCAATGG CGGCGTGCTG GAGATGAAGG TCAACAAGCG CAAGTTCCCG
GTGAGCCTGC TGCTGCGCGT GCTGGGCTAC GACGATGCCC AGCTGAAGGC CCTGTTCACC
GAGTTTGACC CCGCAGCCGA ACTCCCCGAG GACAAGAGCG CGGGCATGAA TCCCGACGAG
GCTCTGCTGC GCCTCTTCAC GGTGCTGCGC CCCGGCGATC CGCCCAAGCG CGACAAGGCC
ATTCAGTACC TCTACGGTCT GCTCGCCGAC CCCAAGCGCT ACGACCTGGG CGAGCCGGGC
CGCTTTAAGA TGAACACCAA GCTGGGCACT CGGCGCCAGG ACCGGACCCT GCTGACCTTT
GAAGACGGCC GCTTTGGGGA TGCGGGCCTG GTCGACACTA TCCGTTACCT GATGGCGCTT
CAGCAGGGCC TGGAAACGGT CACGATGGGA GCGGACGAAG ACGGCGTGGC CATCGAGGTG
CCGGTCACGG AAGACGACAT CGATCACCTC GGCAACCGCC GCGTCCGCAC GGTGGGCGAG
CTGCTCGCCG ACCAACTCCG AGTGGGCATG GGCCGCATGG CGCGGGGCGT GCGCGAGCGC
ATGCTGCTGG GGAACCCCGA TGCGGCGACC CCCACCAAGC TGGTGAACAA CCGCCCCATC
GTGGCGGCGA TGCGTGAGTT CTTTGGCCGC AGCCAGCTCT CGCAGTTCAA AGACCAGACC
AATCCTCTCT CCGACCTGCG TCACAAGCGC CGCATCTCGG CGCTGGGGCC GGGCGGCCTC
ACCCGCGAGC GCGCGGGCTT CGACGTGCGC GACGTACACC GCACGCACTA CGGGCGCATC
TGCCCCATCG AGACGCCCGA AGGCGCCAAC ATCGGCCTGA TCTCCAGTCT GAGCAGTTAC
GCGAAGGTGA ATGACCTCGG CTTCATCGAG GCGCCCTACC GCCGGGTAGT GGATGGCCGT
GTCACCGACG ACGTGGTGTA CATGACCGCC GATATCGAGG ACCGCTACGT GATCGCCCAG
GCGAACTCCC CACTGAACCC GGACGGTACC TTTGCGGAAG AGCGCGTCTT GGCCCGCAAG
AAGGGCGACC CGATGCTGTA CGCGCCCACC GAAGTGGACT TCATGGACGT GTCGCCCAAG
CAGATTGTCT CCATCAACAC GTCTCTGATT CCCTTCCTCG AGCACGACGA CGCCAACCGC
GCCCTCATGG GTTCCAACAT GCAGTCGCAG GCTGTGCCGC TCGTGCGGGC TGACTCTCCC
GCCGTGGGCA CGGGCGTCGA GGAGCGTGTG GTGACCGACT CGGGTACCAG TGTCATCAGC
GACGTGACCG GCCGCGTGAC CTACGTGGAC GCCCGTGCGA TTCAGGTGAC GCTGACCGAG
GACGCGCCGC AGATCGGGCT GGTGAAGGGC AACGTCCGTA CCTTTGAGCT GGTGCGCTTT
ACCCGCTCCA ACCAGGGCAC CAACCTCGAC CAGCACCCTA TCGTTAGTGT GGGAGATGAG
GTTGTGCCGG GGCAGGTCAT CGCAGACGGT CCGGCCTCCG ACCAGGGCCG CTTGGCGTTG
GGTCAGAACA TCACCATCGC GATCATGCCC TTCGACGGCT TCAACTTCGA GGACGCGATC
TGCATCTCCG AAGGGCTGGT TCGCAAGGAC TTCTACACCT CGGTCCACAT CGAGAAAGAC
GAGATCGAGG CCCGCGACAC CAAGTTGGGG CCGGAAAAGA TCACCCGCGA TATCCCGGGC
CTCTCGGAAG CAGCGCTGCG TGACCTCGAC GAGGACGGCA TCGTGCGCGT GGGGGCAGAA
GTCAAACCCG GCGACATCCT GGTGGGCAAG ACCTCCTTTA AGGGCGAGTC GGAACCCACC
CCCGAAGAGC GCTTGCTGCG CTCGATCTTC GGTGAAAAGG CCCGTGAGGT CAAAGACACC
TCGCTGCGCG TGCAGTCCGG CCAGGGCGGC ATCGTGGTGA AGACCGTGCG CTTCCGCCGC
GGTGATGAGG GCGTGGACCT CAAGCCCGGC GTGCGCGAGA TGGTGCGCGT GTACGTCGCC
CAGAAGCGCC AGCTCCAGGT GGGTGACAAG GTGGCCAACC GCCACGGGAA CAAGGGCGTG
GTTTCCAAGA TCCTGCCGCC CGAAGACATG CCCTACCTCG AAGATGGCAC CCCGGTCGAC
CTGGTGTTTA ACCCGCTGGG CGTGCCGAGC CGCATGAACC TCGGCCAGAT TCTGGAAACG
CACCTCGGTG AGGTCGCGCG CCTGACCGGC CAGAAGTTCG TGACGCCGGT GTTTGACTCC
GCCACCGAAG AAGCCATCAA GGAGATGCTG GAAGTCGCTG CCGCCGAACG CCTGCAGCGC
CGCAAGGACG AGGGCTTCGA ACTCGACAAG CGCGAACAGG AGGTGCTCGA CCGCGCCGGG
AAGCTCGGGG TCATCAGTCC GCCGAATGGT GATTACGCAG CCGCGCAGAT GCAGCTGGCC
CGCACCGGCA AGAGCGTCCT GTACGACGGG CGCACCGGCG AGCCGATCAG CGGCCCGGTC
GTGGTGGGCA CCATGTACGT CATGAAGCTC TACCACATGG TGGAGGACAA GCTGCACGCC
CGCTCCACGG GTCCGTACTC CCTGATCACC CAGCAGCCGC TGGGCGGCAA GGCGCAGTTC
GGCGGCCAGC GCTTCGGCGA GATGGAAGTG TGGGCGCTGG AGGCCTACGG CGCGGCGCAC
ACCCTCCAGG AGATGCTCAC CATCAAGTCC GATGACATCG ACGGGCGCGA CGCCGCCTAC
CAGAGCATTG TCAAGGGTGA GGAAGTCTCC GGCAGCACCA TCCCCGAGTC CTTTAAGGTG
CTCGTCAAGG AACTCCATTC CCTCGGCTTG GATGTCGAGG TGCTGGACAA CAATGACAAG
CCGGTGGATA TCTTCGAAGG GATGATGCCC AAGAGGTAA
|
|---|
| Protein sequence | MSLTDQKPRI ERFGEITEVI PLPNLTEVQV NSFKAFLQAD KAPDERDDTG LQSAFREVFP
IDETEKGRST GLVLDFLEYR LGEPPYTPEE CREKDLTYQA PLYAKLQLIH KDSGLIKEDQ
VFLGDLPLMT DDGSFVINGA DRVVISQIHR SPGVYFTSSY KGIKKMYTAA IIPMPKRGPW
IELEFNGGVL EMKVNKRKFP VSLLLRVLGY DDAQLKALFT EFDPAAELPE DKSAGMNPDE
ALLRLFTVLR PGDPPKRDKA IQYLYGLLAD PKRYDLGEPG RFKMNTKLGT RRQDRTLLTF
EDGRFGDAGL VDTIRYLMAL QQGLETVTMG ADEDGVAIEV PVTEDDIDHL GNRRVRTVGE
LLADQLRVGM GRMARGVRER MLLGNPDAAT PTKLVNNRPI VAAMREFFGR SQLSQFKDQT
NPLSDLRHKR RISALGPGGL TRERAGFDVR DVHRTHYGRI CPIETPEGAN IGLISSLSSY
AKVNDLGFIE APYRRVVDGR VTDDVVYMTA DIEDRYVIAQ ANSPLNPDGT FAEERVLARK
KGDPMLYAPT EVDFMDVSPK QIVSINTSLI PFLEHDDANR ALMGSNMQSQ AVPLVRADSP
AVGTGVEERV VTDSGTSVIS DVTGRVTYVD ARAIQVTLTE DAPQIGLVKG NVRTFELVRF
TRSNQGTNLD QHPIVSVGDE VVPGQVIADG PASDQGRLAL GQNITIAIMP FDGFNFEDAI
CISEGLVRKD FYTSVHIEKD EIEARDTKLG PEKITRDIPG LSEAALRDLD EDGIVRVGAE
VKPGDILVGK TSFKGESEPT PEERLLRSIF GEKAREVKDT SLRVQSGQGG IVVKTVRFRR
GDEGVDLKPG VREMVRVYVA QKRQLQVGDK VANRHGNKGV VSKILPPEDM PYLEDGTPVD
LVFNPLGVPS RMNLGQILET HLGEVARLTG QKFVTPVFDS ATEEAIKEML EVAAAERLQR
RKDEGFELDK REQEVLDRAG KLGVISPPNG DYAAAQMQLA RTGKSVLYDG RTGEPISGPV
VVGTMYVMKL YHMVEDKLHA RSTGPYSLIT QQPLGGKAQF GGQRFGEMEV WALEAYGAAH
TLQEMLTIKS DDIDGRDAAY QSIVKGEEVS GSTIPESFKV LVKELHSLGL DVEVLDNNDK
PVDIFEGMMP KR
|
|---|
| |