Gene Dgeo_0236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDgeo_0236 
Symbol 
ID4059144 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDeinococcus geothermalis DSM 11300 
KingdomBacteria 
Replicon accessionNC_008025 
Strand
Start bp220910 
End bp221887 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content62% 
IMG OID641229236 
ProductCRISPR-associated Csd2 family protein 
Protein accessionYP_603708 
Protein GI94984344 
COG category[L] Replication, recombination and repair 
COG ID[COG3649] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR01595] CRISPR-associated protein, CT1132 family
[TIGR02589] CRISPR-associated protein, Csd2 family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCAGA CCTCTTCCCC CCTCCGCAAC CGTTATGAGT TTCTGCTGCT GTTCGACGTG 
GAAAATGGCA ACCCGAACGG CGACCCCGAC AGCGGCAATG CCCCCCGCGT AGACCCCGAA
GACGGCCACG GTTTGGTCTC GGATGTGGCC CTGAAGCGCC GCGTGCGCAA CTACGTTCAG
GCAGCGGGCG AACAGATTTT TATTCAGCAC GGCACCAACC TCAACCGGCC CATCTTCCAG
GCCAAACAGG CAAGCGGCGG CGGCAGCAAG GGCAAACAGG ACGTGGATGC GGCGCGGCGG
TGGATGTGTG AGCACTTCTA CGACGTCCGG ACCTTTGGCG CCGTGATGAG CACAGGGGCC
AACGCCGGAC AGGTGCGCGG CCCGGTGCAA TTGACCTTTG CCCGCAGTCT TGATCCGGTG
TTTGCCATCG AGGCCAGCAT CACCCGCGGG GCCGTGGCGG AAGACATCAA GAATGCCAAA
ACACTGGACG ATTTTTTGAA TTGGGAAGCT CAGCAAGACG AAGACAAACT CCGCACGATG
GGCCGCAAGA GCCTGATTCC CTATGGCCTC TTTGCCACCA AGGGCTTTGT GAGTGCCCAT
CTCGCGCAGG GCACCGGTTT CAGTGAGGCT GACCTCAAGC TGCTTCTCGA AGCCCTTCTG
AACATGTACG AGCACGACCG CAGCGCGAGC AAGGGGCTGA TGAGTAGCCG CCGCCTCTTC
GTGTTCCGGC ACGTGGGCAC GGACAGCGAT CCGCAGCAGC GCGCCCGTCA GGCTGTGCTG
GGCTGCGCTC CGGCCCACAA ACTCCTCGAT CTGGGACAGG TGATCGAGGT CCGGCGCAAA
GATGAACACA AGCCGGCCCG TGCCCTCAGC GACTACGAGG TGACGGTGCA CCTTGACCGC
CTTCCGGCGG GCGTTGAGTT GTTGGACCTG GACAGCTGGG ACGAGGCTCG GTATCACGAC
GGCTGGCAAT CCCGGTAG
 
Protein sequence
MTQTSSPLRN RYEFLLLFDV ENGNPNGDPD SGNAPRVDPE DGHGLVSDVA LKRRVRNYVQ 
AAGEQIFIQH GTNLNRPIFQ AKQASGGGSK GKQDVDAARR WMCEHFYDVR TFGAVMSTGA
NAGQVRGPVQ LTFARSLDPV FAIEASITRG AVAEDIKNAK TLDDFLNWEA QQDEDKLRTM
GRKSLIPYGL FATKGFVSAH LAQGTGFSEA DLKLLLEALL NMYEHDRSAS KGLMSSRRLF
VFRHVGTDSD PQQRARQAVL GCAPAHKLLD LGQVIEVRRK DEHKPARALS DYEVTVHLDR
LPAGVELLDL DSWDEARYHD GWQSR