| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dgeo_0179 |
|---|
| Symbol | |
|---|
| ID | 4058425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Deinococcus geothermalis DSM 11300 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008025 |
|---|
| Strand | + |
|---|
| Start bp | 167919 |
|---|
| End bp | 169658 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641229177 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_603651 |
|---|
| Protein GI | 94984287 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.78205 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTGT TTGCCCTCGT TTCTTCACGT CTCCGGGCGC CCTACGCGCT GCTGACTGCC
CTGGCCCTCG GCCTGGGCGC CGTGCCCGCT GCAGCCCTTG GGGCTGTGCA ACTGACCGTC
ACCACCGATC AGACGGCGGT CTCGGTCAAT GGCCAGGCCA GCCAGTACCT GTCCCCGCCG
CGCCTCCTGA ACGGCCGGAC CATGTTGCCG CTGCGCGAGA CCGCCGTGCT GTTGGGTCAG
ACGTTGGTCG ACGCCGGCGG GCAGCTCCAG CTGGGGCGCC TGACGGTCGA CCCGGCGCGG
AACGCCGCTT TTCTGGCCGG AGTGTTGCAG CCCGACGGCA GCGTCGTCAC GGTCGGGACC
ACCCTGTATG TCAGTGCCCG GCTGTTGGCG GACGCGCTGA ACGCGAACCT GACGGTGGAC
GGGCGCACGC TGACCCTCAC CGCGCTGCGC GAGGGGGGCA ATCCACTGGC GCCGCAGGCC
CGCTTTTCGA CCGACAAGAC CACCTACGCG CCCGGTGAGC GCGTGATCTT CACGGAGTAC
GCCTTTGACC CCGACGGCGC CGACATCGTG AGTCGCAAGT GGACGGGGCG CCAGGACGTG
TACTTTCAAC CGGGCACCTA CACCGTCACC CTGCAGGTCA CCAACAGCCG CGGTCTCCAA
AGTGAACCCT TTTCCCGGAC GATCCGGGTG GAGGGCGTGC CGGTTGATAC GCCGCTGACC
TACGCCCTGA AGTACGCGGA ACCCGGAGAC CGCTTTCCCG ATCCGCTGGT GTCCAGTTAT
CCCGCCGTGG CCGCGCAGCC GGTTTTCGGT GATCGCTACC CGCTGCTTTT CAGTGACAGC
CCAGAGGCGC CAACCCAGAG TGGCATCCTC TATCAGGACA GCCTGGCGGG GCGGGCGCGG
CTGCTCGCGT ACCACCTCAA TGCCTTGGGA CGGCCTGCGC GGCTGTACAT CCTGGCGCGC
AATCTGGAGG GGCGTCCGGT CGAGGTGCGC ACCGAGCGGC TGGGTGAGAC GGCCCCCACC
CGCATCGAGG GGCTGCTGGG TCAGGTGACG CTGCTGGACT ACTTTGCCAG CACCGGCGAA
CACGTCCTGA CGCTCGCCCC TGGCCAGAGT GCGGCGGTGT ACGCCAGTCC CACCCTGAAC
GCTGGGAGTG GCGTGAACGT GATGCAGGAT CTCATCACCA GCGGCCGGGT CGAACTCACC
TTCGTGATGC TGGAAGACAG CCTGCCGCCC ACCGCGCAGG TCGTGCAGCA GATCCCCTAC
CTCCCGCCCG ACGACCGACA CCAGCGCGGG ACCTTTCCGA ACGCCGTGCG TCCGCTGCGG
GTGAACCTGA CCACACTGCC CGCCCGCCTG GTGATTGGAG ACGGTCAGGT GGACCCGGCC
CTCACCGGTA CCGACGTCCT CACAGGCCGC CCCCAGCGTC TCCTGGGCAA TTACGGCGTG
CTGTATGACC TGGAGGTGAA CGGGGCAGCC GGGACCGCCG TTGCCCTCAG CCCGCGCGGT
GGCCTGTATC GAGGAGCAAT GAACATCGAA GACGGCCCGA TCACCCAGAC CATCAAGTTG
CCGCGCACCG GGAACGCCCT CACCCCCGAC CAGCCCGTGC TGCTGTGGCG TGCTCAGTCA
GACCGCCTGA ATATCGATTT CGTGCCCGCC AGCGGGAGCA ACCTGCCTAT TAGCCTGGTG
TTCTACCGCG CGCCCTTTCA GTCGGCGGTC GGGGGCGTGC TCAAGACGTA TCAGCCGTAG
|
|---|
| Protein sequence | MSVFALVSSR LRAPYALLTA LALGLGAVPA AALGAVQLTV TTDQTAVSVN GQASQYLSPP
RLLNGRTMLP LRETAVLLGQ TLVDAGGQLQ LGRLTVDPAR NAAFLAGVLQ PDGSVVTVGT
TLYVSARLLA DALNANLTVD GRTLTLTALR EGGNPLAPQA RFSTDKTTYA PGERVIFTEY
AFDPDGADIV SRKWTGRQDV YFQPGTYTVT LQVTNSRGLQ SEPFSRTIRV EGVPVDTPLT
YALKYAEPGD RFPDPLVSSY PAVAAQPVFG DRYPLLFSDS PEAPTQSGIL YQDSLAGRAR
LLAYHLNALG RPARLYILAR NLEGRPVEVR TERLGETAPT RIEGLLGQVT LLDYFASTGE
HVLTLAPGQS AAVYASPTLN AGSGVNVMQD LITSGRVELT FVMLEDSLPP TAQVVQQIPY
LPPDDRHQRG TFPNAVRPLR VNLTTLPARL VIGDGQVDPA LTGTDVLTGR PQRLLGNYGV
LYDLEVNGAA GTAVALSPRG GLYRGAMNIE DGPITQTIKL PRTGNALTPD QPVLLWRAQS
DRLNIDFVPA SGSNLPISLV FYRAPFQSAV GGVLKTYQP
|
|---|
| |