Gene Dgeo_2630 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDgeo_2630 
Symbol 
ID4073861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDeinococcus geothermalis DSM 11300 
KingdomBacteria 
Replicon accessionNC_008010 
Strand
Start bp411985 
End bp413706 
Gene Length1722 bp 
Protein Length573 aa 
Translation table11 
GC content70% 
IMG OID641228845 
ProductCRISPR-associated Cse1 family protein 
Protein accessionYP_594138 
Protein GI94972098 
COG category 
COG ID 
TIGRFAM ID[TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGACACGT TTCCCCTACT CGACAGGGAG TGGATTCCCG TGATCGCCGG AGTCGGCGAG 
CGGCGGCACG TCTCCCTGCG GGATTCCCTG CTGCGGGCCG CCGAGTTCCG CCGCATCGAC
GCCGGGCATC CCTTGCAGAC TGCCGCGCTC TACCGCCTGC ACCTCGCGGT GCTGCACCGG
GCACTCAAGG GGCCAAGGGA CGCCGAGCAG GGGGCTGACT GGTACTTGGC CGGGCACTTC
CCGGACGATG TGGCCCATTA TCTGGACCGC TACGCCGACC GCTTTCACCT CTTCGGACCG
CAGCCCTTCT TGCAGGTGAA GGATCTGGAC CCGGCCTTGG TGGGCGAGAA CTTCCGCAGT
CACTGGACCC GCCTGAGCGC CGAGGAGGGC AGTCCGAATA CGACGGCCCT CTACAACGTG
GAGGCCCGCC CTGGTGGAGA CCGTTCCGAC GCTCTGACCC CGGCGCAGGC AGCCCTGCGG
CTGCTGGAGC ATCAGAACTT TGCGCTGGGG GGCCTCATCA AGCGCTTCAC CACGTCGGCG
CGGGCAGCTC CGGTGGCGAC GGCGGGCCTC TTCCTGGCGG AGGGAGCGAA CCTGCACCAG
ACCCTGTGCC TGAACCTCGT GCCCTACCCG CAGGCCATGC ACGGGCCGGA CCTCCCCCCC
TGGGAGGAGG CCCCCCTGAC CGTGGCCCAG ATTCGCGCCT GCTACGACCC CGAACAGCCC
CGTGTGGCCG CCGGATACGC CAGCCGCTAC ACCTGGCCCA GTCGCAGCGT CCTCCTTCTG
CCGGAGGAGA CGCCGCAGGG CGTGGTCGTG CGCTGGGTCG GCTTCGGGGC TGGGGTTCCG
CTCGCGGGGC CGGGCGAGGG CAGCGGCACG GGCACTGACC CGATGGTCAG CCTGCGCCCC
AGCCGCGACC CCAAGAACGA GCAGCCCTTT CCCTACAAAC TGCGCCGAGA GCGGCTGCTG
TGGCGTGACC TGAATGCGCT GCTGCCCGAC CCCGCCGCCC AGGTGGACGA AAACCGCCAG
GGCAAAGTGA AGGTGCGGCC CGGCACACCC CCCAAAACTG TCTCACAAGC CCGCGCTGTG
ATGAGGGCCG TCGCCGAGCG GCAGAGACGG GTACAGCCGC CTGTCCCCTT CCAGGACGCC
CCCGAAGATG CTTGGGCCGA GGAAGGTACC CCCGACGCCC GCGCCGCACA CCCGGTGATT
CCGGTGGTCG TTTTCGGGCA GCTCACCGAC CAGGGCAAAG CCTTTGCCAT GCGCCAGGAG
ACGTACACGC TGCCGGAAGC CTTTATCGAG AATCCAGAGC GCTTCCGCGA CCACGTGCAG
GCGGCCCTGA CCGACGCAAG CACCGTGGGC GAGGGCCTGC GCCGCTCGGT CCACCTCCTC
GCCCACGCGC TGCTGAAAAA GGACGCTGAA CGCGACCCTC ACAAGGACGA TGTGGGCAAG
CTGGCCAACC AGATTCCCGC CGAGCCGACC TACTGGGCGG GGCTGGACAC TCCCTTCCGC
GCCTACCTGC TCGCGCTGGA CGCGGACCCA CAGGCTGCCC TGCGGGACTG GCACGCGGCC
CTGCGCCGGG CGGCCCTGGT GGGCTGGCAC ACCGCCGAGG AAGCCGCCGG GATGAACGCG
GCAGGCCTGC GGGCCGTCGA GAAAGCGCAG GGGCCGCTGC TGAAGGCCCT GAACACCCTC
AAGCCAAAGG AGACCCCCCA TGACCAAGCA AGAGGCGGAT GA
 
Protein sequence
MDTFPLLDRE WIPVIAGVGE RRHVSLRDSL LRAAEFRRID AGHPLQTAAL YRLHLAVLHR 
ALKGPRDAEQ GADWYLAGHF PDDVAHYLDR YADRFHLFGP QPFLQVKDLD PALVGENFRS
HWTRLSAEEG SPNTTALYNV EARPGGDRSD ALTPAQAALR LLEHQNFALG GLIKRFTTSA
RAAPVATAGL FLAEGANLHQ TLCLNLVPYP QAMHGPDLPP WEEAPLTVAQ IRACYDPEQP
RVAAGYASRY TWPSRSVLLL PEETPQGVVV RWVGFGAGVP LAGPGEGSGT GTDPMVSLRP
SRDPKNEQPF PYKLRRERLL WRDLNALLPD PAAQVDENRQ GKVKVRPGTP PKTVSQARAV
MRAVAERQRR VQPPVPFQDA PEDAWAEEGT PDARAAHPVI PVVVFGQLTD QGKAFAMRQE
TYTLPEAFIE NPERFRDHVQ AALTDASTVG EGLRRSVHLL AHALLKKDAE RDPHKDDVGK
LANQIPAEPT YWAGLDTPFR AYLLALDADP QAALRDWHAA LRRAALVGWH TAEEAAGMNA
AGLRAVEKAQ GPLLKALNTL KPKETPHDQA RGG