| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4678 |
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| Symbol | rplJ |
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| ID | 4070723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | - |
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| Start bp | 5540649 |
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| End bp | 5541197 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637986718 |
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| Product | 50S ribosomal protein L10 |
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| Protein accession | YP_593752 |
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| Protein GI | 94971704 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0244] Ribosomal protein L10 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000989378 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00291158 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGCAGTCA CAAAAGCAAA AAAGATCGAA GTAACTGAGA AGCTGACCGA AGACTTCAAG
AAGGCCAACC ACGCCATCGT GGGCACCTTC AACAAGCTTA CGGTCTCGAA GGACTACGAA
CTCCGCAAGG CAGTCCGCAG CGTGGGCGGC AAGTACTCGG TGGTGAAGAA CACCCTCGCC
GAGCGCGCCG CCAAGGGCAC CAAGATCGAA GACGCCGTGA AGGGCCTGGC GGGCGTGACC
TCGGTCGCGT TCACCGACGG CGATCCGGTC CAGCTCGCGA AGGTGCTCAG CAAGTACGCC
AAGGACAACC CGGAGTATGA GTTCAAAGCC GGTGTGGTGG ACGGAAAGGT CATCAAGCTC
GCCGACATCG ATGCCCTCGC CAACATGCCT TCGAAGGAAG AGCTTTACTC GAAGCTGCTC
TTCCTCATCA GCGCCCCGGC GCAGCGTTTG GTCACGGTGA TGAACGCAAC CGGTCGCGAC
CTCGCCGTGG TTTTGAACCA GGGCGTGGAA AAGCAAAAGT TCTCGGGCGG AGAAGCACCC
GCCCAGTAG
|
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| Protein sequence | MAVTKAKKIE VTEKLTEDFK KANHAIVGTF NKLTVSKDYE LRKAVRSVGG KYSVVKNTLA
ERAAKGTKIE DAVKGLAGVT SVAFTDGDPV QLAKVLSKYA KDNPEYEFKA GVVDGKVIKL
ADIDALANMP SKEELYSKLL FLISAPAQRL VTVMNATGRD LAVVLNQGVE KQKFSGGEAP
AQ
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