| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4676 |
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| Symbol | rpoB |
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| ID | 4070721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | - |
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| Start bp | 5534732 |
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| End bp | 5539201 |
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| Gene Length | 4470 bp |
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| Protein Length | 1489 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637986716 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_593750 |
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| Protein GI | 94971702 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.765247 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00735061 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGAAA AGAAAATTGC CTTCCGCAAC CGTCAAGACT TCTCGAAAAT TCCGGCGACG
ATCCAGATTC CGAATCTGAT CGAAGTGCAG AAGCGTTCCT ACGACCGCTT CCTGCAGATG
GACCTGTTGC CGAGCGAGCG TGACGATGCG GGGCTTCAAG CGGTATTCCA GTCGGTCTTT
CCGATCACGG ATTTCCGCAA TGTTTCCCAA CTTGAGTTCG TGGATTACGC GATCGGCAAC
TGGGAGTGCA AGTGCGGTCA CCTTAAGGGA CTGCATCACC TGCGTACAAC TTGTAAGAAC
TGCGGCGCGA CCGTAGTAAC CGATCCCTTC CACCCCGGCG ACGTGCTCTG CCACAAGTGC
GGCACGTTCA ACGCCAACAC GCCTGACTTC TGCAACAAGT GCGGCGACCC TGTCGGCTTG
CAACTGAAGT ACGACGTGGC GGAGTGTGAA GAGCGCGGCA TGACCTATTC AGCTCCGCTG
AAGGTCACCA TGCGCCTCAC CATCTTCGAC AAGGACCCGG AGACGAACAA CCGCACCATC
CGCGACATCA AGGAACAGGA AGTGTTCTTT GGTGACGTTC CGCTGATGAC CCAGAACGGT
ACGTTCATCA TCAACGGCAC CGAGCGCGTG ATCGTCAGCC AGTTGCATCG TTCGCCCGGC
GTCTTCTTCG AGACCGCAAA CAACCGCACC TACTTCCTCG GCAAGATCAT TCCTTACCGC
GGATCGTGGG TCGAGTTCGA GTACGACCAG AAGAACATCC TGTACGTCCG CATTGACCGC
AAGCGCAAGT TCCTGGGAAC CATCTTCCTG CGCGCTCTCG GCCTGCGTAC CGACGAGGAC
ATTCTCCGCA CGTTCTACAC TGTCGATCGC ATCGCGGTGA AAGACAAGAA GCTCTACTGG
ACGCTGGAGC CGGGCATCGA GCGCCCGACC AACCTCGTTG GGTTGAAGCT TTCGCACGCC
ATCAAAGCCA AGAACGGCGA AGAAGTCGCG CACTCTGGCC GCAAGGTCAC AGCCTCGGTC
CTAAAGGAAA TCCAGAAGCA CAAGATCTCG GAACTCGAGA TCGAACTGGG TGATCTTGAA
GGAGCGTACG TAGCTTCCGA CGTCATCGAC ACCAACACCG GCGAAGTCCT GCTCGAAGCC
AACCAGGAAC TCACCGCCGA CAAGTTGTCG AAGATGATCG ACGCCGGCAT CGGAGAAGTG
AACGTATTCT TCCCCGAGCG CGACGACGTG GGCACCGTGA TCAGCGCGAC GCTGCGCCGC
GATTCCGTCA AGACTCCGCA AGAAGCCTTG ATCGAAATCT ACCGCAAGCT GCGTCCGGGC
GATCCGCCGA CCCTCGACAC CGCGACCGCG CTCTTCCACG GCATGTTCTT CGATGCCCGG
AAGTACGACT TCTCTCGCGT GGGCCGCTTG AAGTTCAACA TCAAGCTGTT CGACCGTCAG
GACCCGACCG GACTCGACAA GCGCACGCTG GATCCGGATG ACTTCTACCA CACCATCCGT
TACCTGCTGA AGCTGCGCCG CAATCTCGGC GCGGTGGACG ACATCGATCA CCTTGGCAAC
CGCCGCGTCC GCGCTGTGGG CGAACTCCTC GAGAACCAGT TCCGCATCGG CCTGGTCCGC
ATGGAGCGCG CAATCAAGGA AAAGATGAGC GTGTACCAGG AAATGTCGAC GGCCATGCCG
CACGACCTGG TCAACGCCAA GCCGGTCATG GCTGCCATCC GCGAGTTCTT CGGATCCTCG
CAGTTGTCGC AGTTCATGGA CCAGACCAAC CCGCTCTCGG AAATTACCCA CAAGCGCCGC
TTGTCGGCAC TTGGCCCGGG CGGCCTTTCG CGTGAACGCG CCGGATTCGA AGTCCGCGAC
GTTCACCCGA CGCACTACGG CCGTATCTGC CCGATCGAGA CGCCAGAAGG TCCGAACATC
GGCTTGATCT CGTCGTTGAG CTGCTATGCG CGGATCAATG ACTACGGCTT CATCGAGTCG
CCGTACCGCC GCGTAAAGGG CGGACGCGTG ATCGACTACG TCCAGGTGAC GCACGCCGGT
GACAGCGATT ACCGCGTGGG CGACAAGATG GAGAAGTCGG AAGCGCAGAA GGCGAACGAA
GAGTTGCGCG GCCGCAAGAA GCGCGGCATC GAACTCGAGC CATACTCCTT CTACCTCTCC
GCTTGGGAAG AAGATAAGTG GACGATCGCG CAGGCCAACG CCGAACTCGA CGAGAAGGGA
AAGATCACTT CCGAACTCGT CAACGCGCGT AAGGCCGGCA ACTTCGTGTT GATCAGCCGC
GATGACATCG ATTACATCGA CGTCAGCCCG AAGCAGCTCG TTTCCGTCGC TGCCTCGCTG
GTTCCGTTCC TCGAACACGA CGACGCCAAC CGCGCTCTCA TGGGCGCGAA CATGCAACGT
CAGTCCGTGC CGCTGCTCCG CGCCGAGGCC CCGATCGTGG GCACCGGTAT GGAAGGCGTC
ACCGCGCGTG ATTCCGGCGC GGTCGTGCTC GCACGCCGCT CAGGCATCAT TGACTCGGTC
GACTCGGAAC GCGTAATCGT GCGCGTTGAG GGCGAGCATC ATCCGATGCA GCTCTCCCGT
GAAGTTGGTA GCGATATCTA CCAGCTCACG AAGTTCAAGC GCTCGAACCA GAACACTTGT
ATCAACCAGA AGCCCATTGT GAAGCAGGGC GATCACGTGA AGAAAGGCCA GGTCATTGCT
GACGGTCCTT GCACCGACCA CGGCGAACTC GGCCTCGGTC GTAACGTGCT CGTGTCCTTC
ATGCCATGGC GCGGTTACAA CTTCGAAGAC GCGATCCTCG TCTCCGAGAA GCTGGTCAAG
GAGGACTACT ACACCTCCGT CCACATCGAG GAGTTCGAGA TCGAAGCTCG CGACACCAAG
CTCGGTCCGG AAGAAATCAC CCGCGACATC CCCAACGTCA GCGAATCTGC GCTGCGTGAC
CTGGATGAAA GCGGTGTGAT CCGTATCGGC GCCCCTGTGA AAGCAGGCGA CATCCTGGTG
GGCAAAGTTA CGCCGAAGGG CGAAACCCAG CTCACTCCGG AAGAGAAGCT GCTGCGTGCC
ATCTTCGGCG AAAAAGCCGG TGATGTCCGC GACGCTTCGC TCACCTGTCC TCCGGGCATC
GAGGGCGTGG TTGTGGACGT CAAGATCTTC TCGCGCAAAG GCCAGGAAAA GGACGAGCGC
GCCAAGCAGA TCGAAGGCAC CCAGATCGCG AAGTTGGAAA AGAACCTTGC TGACGAAATC
CGCATTTTGA CCGACGAGCG CTTGAAGCGT CTCGAAGGCC TGTTGGGCGC CAAAGTCGTG
CAGGCTGATT TGCATGACGA GCGCACCAAC AAGCGCCTCC TGACCAAGGA CGCCGTCCTC
GACCGCGAGA CCATCGAGCG TATCTCGACG CGCAATTTGA AGCGCATCAA GTACGCCGAC
AAGGACCCGC GCGTCAACGA GCAGATCGAC GAGATCGAGG AAATGACCTC GCGTCAGATC
GATGTGCTGC GGAAGATCGT TCGCGAAAAG ATCGAAAAAC TGCAGAAGGG CGACGAACTG
CCTCCCGGCG TGATCAAGCT GGTGAAGGTC TACATCGCCA TGAAGCGCAA ACTGAGCGTC
GGCGATAAGA TGGCCGGCCG CCACGGTAAC AAGGGTGTCA TCGCCCGCAT TCTGCCCGAG
GAAGATATGC CGTACCTCGA GGATGGAACG CCGGTCGAGA TCGTCCTCAA CCCCCTGGGC
GTGCCAAGCC GTATGAACGT CGGCCAGATC CTGGAGACGC ACCTCGGCTG GGCCGGACAT
GAACTCGGTA AGAAGATCGC CGAATTCATG GTCGAGAACT CGGAAGCCGG CCAGGTCCGC
AAGCACCTCA AGCAGCTCTT CAAAGACACC GCGTTCGTCG ACCACGTTAC CGAGCTCGAC
GACGAGATGT TGCTGAAGGT TGCGAAGGGC ATGCAGGATG GCGTCTTCTT CGGTTCCGCC
GTGTTCGACG GTTCCACGGA AGCTGAGATC AAGTCGCTGC TCGACCAGGC AGGCCTGCCG
ACCTCCGGCA AAACCTTCCT GTACGACGGC ATGACAGGCG ATCGCTTCGA GCAGCCGGTA
ACGGTTGGCT ACATCTACAT GCTCAAGCTG TCTCACCTCG TCGACGACAA GATCCACGCG
CGTTCGATCG GTCCGTACTC CCTCATCACC CAGCAGCCGC TGGGCGGCAA GGCGCAGTTC
GGTGGTCAGC GTTTCGGAGA AATGGAAGTG TGGGCGCTCG AAGCTTACGG CGCTGCTTAC
ATCCTCCAGG AACTGCTGAC GGCGAAGTCC GATGACGTTT ATGGCCGTAC CAAGATTTAC
GAGGCCATCG TCAAAGGCGA AGCCGCGATC GAGCCGGGCG TTCCGGAATC GTTCAACGTG
CTCATCCGCG AGTTGCAGTC GCTCTGTCTT GATGTTGAGT TGATCAAGAC CAAAGAGAAA
GCTGCTCCCG CGCCTGTAGC CGCCGACTAA
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| Protein sequence | MAEKKIAFRN RQDFSKIPAT IQIPNLIEVQ KRSYDRFLQM DLLPSERDDA GLQAVFQSVF
PITDFRNVSQ LEFVDYAIGN WECKCGHLKG LHHLRTTCKN CGATVVTDPF HPGDVLCHKC
GTFNANTPDF CNKCGDPVGL QLKYDVAECE ERGMTYSAPL KVTMRLTIFD KDPETNNRTI
RDIKEQEVFF GDVPLMTQNG TFIINGTERV IVSQLHRSPG VFFETANNRT YFLGKIIPYR
GSWVEFEYDQ KNILYVRIDR KRKFLGTIFL RALGLRTDED ILRTFYTVDR IAVKDKKLYW
TLEPGIERPT NLVGLKLSHA IKAKNGEEVA HSGRKVTASV LKEIQKHKIS ELEIELGDLE
GAYVASDVID TNTGEVLLEA NQELTADKLS KMIDAGIGEV NVFFPERDDV GTVISATLRR
DSVKTPQEAL IEIYRKLRPG DPPTLDTATA LFHGMFFDAR KYDFSRVGRL KFNIKLFDRQ
DPTGLDKRTL DPDDFYHTIR YLLKLRRNLG AVDDIDHLGN RRVRAVGELL ENQFRIGLVR
MERAIKEKMS VYQEMSTAMP HDLVNAKPVM AAIREFFGSS QLSQFMDQTN PLSEITHKRR
LSALGPGGLS RERAGFEVRD VHPTHYGRIC PIETPEGPNI GLISSLSCYA RINDYGFIES
PYRRVKGGRV IDYVQVTHAG DSDYRVGDKM EKSEAQKANE ELRGRKKRGI ELEPYSFYLS
AWEEDKWTIA QANAELDEKG KITSELVNAR KAGNFVLISR DDIDYIDVSP KQLVSVAASL
VPFLEHDDAN RALMGANMQR QSVPLLRAEA PIVGTGMEGV TARDSGAVVL ARRSGIIDSV
DSERVIVRVE GEHHPMQLSR EVGSDIYQLT KFKRSNQNTC INQKPIVKQG DHVKKGQVIA
DGPCTDHGEL GLGRNVLVSF MPWRGYNFED AILVSEKLVK EDYYTSVHIE EFEIEARDTK
LGPEEITRDI PNVSESALRD LDESGVIRIG APVKAGDILV GKVTPKGETQ LTPEEKLLRA
IFGEKAGDVR DASLTCPPGI EGVVVDVKIF SRKGQEKDER AKQIEGTQIA KLEKNLADEI
RILTDERLKR LEGLLGAKVV QADLHDERTN KRLLTKDAVL DRETIERIST RNLKRIKYAD
KDPRVNEQID EIEEMTSRQI DVLRKIVREK IEKLQKGDEL PPGVIKLVKV YIAMKRKLSV
GDKMAGRHGN KGVIARILPE EDMPYLEDGT PVEIVLNPLG VPSRMNVGQI LETHLGWAGH
ELGKKIAEFM VENSEAGQVR KHLKQLFKDT AFVDHVTELD DEMLLKVAKG MQDGVFFGSA
VFDGSTEAEI KSLLDQAGLP TSGKTFLYDG MTGDRFEQPV TVGYIYMLKL SHLVDDKIHA
RSIGPYSLIT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY ILQELLTAKS DDVYGRTKIY
EAIVKGEAAI EPGVPESFNV LIRELQSLCL DVELIKTKEK AAPAPVAAD
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