| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4630 |
|---|
| Symbol | |
|---|
| ID | 4070787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 5487716 |
|---|
| End bp | 5488975 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637986670 |
|---|
| Product | ABC efflux pump, inner membrane subunit |
|---|
| Protein accession | YP_593704 |
|---|
| Protein GI | 94971656 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTTC GCGATCTCTT CATCGACGTT TTCAGCACAC TCTGGGCGCA CAAGTTGCGG
ACCGCTCTCA CTATGTTTGG GATCGGGTGG GGCGTGGTGT CGATTGTGCT CATGGTGGCG
GCGGGCGAAG GGCTGCGCGT GGGCCAGAAG AAGCAGACCG AGAATCTTGG CAAAGACATC
ATGATCGTGT TTTCGGGCGG ACGCACGAGC ATGCAGGCGG GCGGGCAGCG CGCGGGGCGC
CGCATTAAGT GGAGAGACAC CGACATTCCG CAGGTGAAAG AGGATTCGCC GAATTGCAAG
TACGTGCTAC CGGAGCTGGG CAACAATGTG CGCATCCGCA GCCAGTACAA CAATGCGTCG
CTGCTGATTT CCGGTTCGTA TCCGGAGTTC GCAGAAGTGC GAAGCATCGA TGTGGCGCAG
GGCTCGTTTT ATAACTGGGA AGACGTGCGG CAGACGCGGC GGGTAGCGTT CCTTGGCAGC
GATGCTGCGA AGCAGTTGTT CCCTGGGCGT AATGCGCTGG GTGAGACCAT CCTGCTGGCG
GATCATCCTT ACCTGGTGAT CGGCGTGATG AAGAAGAAAG ACCAGGACTC GAGCTACGAC
GGCTTCGACG TCAACAAAGT TTTTGTGCCC TACACCGCGG CGCGCGAAGA TTTTCCGAAC
AAGCCACCGG ACGATGCGCA CTCGCTGGAC CGGCTGCTGA TTGTGCCGAA TTCCGTGGAA
GAGCACATGG ACTGCAAGCG CGAGTTCCGC AACTCGCTCG GTCGCATCTA CACCTTCGAC
CCGCGTGACA AAGAGGCCGC CGGGGTTTGG GACACAGTAG AGGAGGCAAA AGAATTTCAG
AAGATGACCG ACGGGATGAA GTACTTCCTC GGTGCAGTCG GCGTCACAAC GCTGTTCCTG
GGTGCGATTG GCGTAATGAA CGTGATGCTC GTGGCCGTAC GCGAGCGCAC GCGAGAGATT
GGCGTGCGTA AAGCTGTGGG CGCGCCGGCG CGCAGCATCC TCATGCAGTT CTTCCTGGAG
ACGTGCATCA TTGTGGCGCT GAGCGGCGGT GGAGGCCTGC TCGCCGCGTT TGGATTCTGT
GCGCTGGTGA ACCTGGCGCC GATGCCGCCA TTCTTCGCGG GACTGCTGCC GACTTGGCAA
TCGGGACTGC TGGCGACCGG CCTGCTCGGG GTTATTGCGG TGTTGGCGGC GATGTATCCG
GCGAGCGAGG CAGCGCGCAT CGATCCGATT GAGGCGCTGC GTTACGAGGC GGGAGGCTAA
|
|---|
| Protein sequence | MNLRDLFIDV FSTLWAHKLR TALTMFGIGW GVVSIVLMVA AGEGLRVGQK KQTENLGKDI
MIVFSGGRTS MQAGGQRAGR RIKWRDTDIP QVKEDSPNCK YVLPELGNNV RIRSQYNNAS
LLISGSYPEF AEVRSIDVAQ GSFYNWEDVR QTRRVAFLGS DAAKQLFPGR NALGETILLA
DHPYLVIGVM KKKDQDSSYD GFDVNKVFVP YTAAREDFPN KPPDDAHSLD RLLIVPNSVE
EHMDCKREFR NSLGRIYTFD PRDKEAAGVW DTVEEAKEFQ KMTDGMKYFL GAVGVTTLFL
GAIGVMNVML VAVRERTREI GVRKAVGAPA RSILMQFFLE TCIIVALSGG GGLLAAFGFC
ALVNLAPMPP FFAGLLPTWQ SGLLATGLLG VIAVLAAMYP ASEAARIDPI EALRYEAGG
|
|---|
| |