| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4592 |
|---|
| Symbol | |
|---|
| ID | 4071537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 5439063 |
|---|
| End bp | 5440244 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637986632 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_593666 |
|---|
| Protein GI | 94971618 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.79248 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.646635 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCAAAGA AGATCCGGGT GGGCGTGTTG TTTGGTGGAC GCAGCGGCGA GCACGACGTC
TCGCTGCTGT CGGCGGCGTC GGTGATCAAC GCAGTCGATA AGAAGAAGTT CGAGGTCGTT
CCGATCGGCA TCACCAAAGA AGGTAAGTGG CTCACGGCCT CGCATGCTGA GTCGTTGCTG
AATGGCAAGA AAGCCGAGCA GCAACTGCGC GCGGGTGATC CCGAGGCGAC GCCCGGTGCC
GCGGTGCTCG CGAAGGGCGA AGCTGTGCTG GTCCCTCCGG TTCCGCAGTC AGACCGCTCG
GCGATCGTTC CGTTTGAGAC CGATGCGGCA GGCCATTCCG CTTCGTCTAT CGATGTTGAC
GTCATCTTCC CCGTGCTCCA CGGCACCTTC GGCGAAGACG GCACCATCCA GGGACTCTTC
GAACTGGCGA ACATACCCTA CGTCGGCGCA GGCGTACTTG GCTCGGCGGC CGGCATGGAC
AAAGACATCA TGAAGGCGCT CTTCAAGAAC GCTGGCCTTC CGATCGTGAA GCACATGACC
GTGCTGCGCA GCCAGTGGCA ACGCGAGCCA AAGAAAGTGA AGAAGCTGGT CGAGTCGAAA
CTGAAGTATC CGGTGTTCGT AAAGCCGGCA AACCTCGGCT CGTCGGTCGG CATTTCCAAG
GCGCATGACT CGAAAGAGTT AGGGCCGGCG CTCGATGAGG CCGCGAAATT CGACCGCAAG
CTCGTCATCG AACAAGGCGT AGGCGGCAAG AAAAAGAAAG CGCGTGAGAT CGAGTGTTCC
GTCCTCGGCA ACGACGAGCC GAAGGCATCC GTCCCTGGCG AAATCGTGCC GATCAAAGAA
TTTTACGATT ATGCCGCCAA GTATCTGGAT GAAGGCTCGG CGCTCGAAAT CCCTGCGAAG
CTTCCCAAAT CCACACAGAA ACAGGTGCAG GAACTCGCAA TCCGCGCCTT TCAGGCGGTG
GATGGCAGCG GCCTGGGACG AGTGGATTTC CTCATCGATC CCAAGAGCAA CAAACTTTAT
GTCAACGAGA TCAATACGAT GCCGGGGTTC ACTTCGATCA GCATGTATCC CAAGTTGTGG
GAAGCCTCGG GCCTGAAATA TACGGACCTG ATTACGCGCT TGATTGAGTT GGCGCTGGAG
CGCCACGCCG ACAAACAAAA AAATCAGTAC ACCAAGGACT GA
|
|---|
| Protein sequence | MAKKIRVGVL FGGRSGEHDV SLLSAASVIN AVDKKKFEVV PIGITKEGKW LTASHAESLL
NGKKAEQQLR AGDPEATPGA AVLAKGEAVL VPPVPQSDRS AIVPFETDAA GHSASSIDVD
VIFPVLHGTF GEDGTIQGLF ELANIPYVGA GVLGSAAGMD KDIMKALFKN AGLPIVKHMT
VLRSQWQREP KKVKKLVESK LKYPVFVKPA NLGSSVGISK AHDSKELGPA LDEAAKFDRK
LVIEQGVGGK KKKAREIECS VLGNDEPKAS VPGEIVPIKE FYDYAAKYLD EGSALEIPAK
LPKSTQKQVQ ELAIRAFQAV DGSGLGRVDF LIDPKSNKLY VNEINTMPGF TSISMYPKLW
EASGLKYTDL ITRLIELALE RHADKQKNQY TKD
|
|---|
| |