| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4549 |
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| Symbol | |
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| ID | 4071494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | + |
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| Start bp | 5392793 |
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| End bp | 5396341 |
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| Gene Length | 3549 bp |
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| Protein Length | 1182 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637986589 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_593623 |
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| Protein GI | 94971575 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.191603 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCTCC CCTTCGTTCG CGAACTCTTC GCGGACGTGG AAAAGTCTCC TGAATTTCTG
CGTGCAGCCA CCCAGGTAAA GAGCGGCACG GGGCGGATAC GTGTCTCCGG ACTCACCCCC
AGTGCTCGTG CCCTGCATTA CGCCCTCTTC TCGAAAGCCA CTCTCAAGCC GCTGATCGTC
GTCGTCCCCA GCAACCGCGC TGCGGAAGAA CTCCTCCCCA TCGTGCAGGC CTATTGCGAG
CTCACCGGTA CCGCGCACGC CGACGCTGTC GTCATGCTCC CGGCCTACGA CGTTCTCCCC
TACGAGAACC TCTCGCCGCA CCCTGAGATC CAGGAAGCCC GCGCCGCCGC GCTCTGGAAG
ATCGTCTCCG GCACCGCGCG TTTTGTCATC GCGCCATTCG TCGCCACGGC CATGCACTAC
CGCCCCGCCG AGTTCTACTT CGACCTCACC AAGGTCATCA ACCGCGGCAA CTCCATCGAC
TCCGACGAGC TCCGCGCCCA TCTCAATACC TCCGGCTACA GCACCGTAGA CGTCGTCGAA
ATGCCCGGCG AGTACGCGCT GCGCGGCGGC ATTCTCGATA TCTATCCGCC CGAATCCGAG
CACCCCGTCC GCATCGAGCT CTTCGGCGAC GAAGTCGAGT CCATTCGCAA GTTCGATACC
GAGACCCAGC GCTCCGCCGG CGCCACCGAC GAAGTCGTCC TCCTCCCGCT CTCCGACACG
CCCGTCCGGG AAGACATCCT CGGCTCCATT CACGCCAAGC TTTCCGGCCG CCGTCTCGAT
GCCGACGAAG AAACTCTCGA AGCCATCGCG CGCGCCGAAG GCGTCACCGT TTTCCCCGGC
TGGGAGTACT ACGCCGGAGC CACCGCCAAC CAGCGCCTCT TCGACCTCCT CCCCAATGCC
GCCGTCCTCC GCGACGACCC AGTCAAGATC GAGAGCGACT TCGAAGCCTG GTGGGAACGC
GTACAGCAGA GCCACGAACG CAGCGGCGTC GGCCACCTCG TTCGCCCCGA AGATCTGCTC
GACTCACCCG ACACTTGGCA GCAACGCATC GCCTCGCTCC CCGGCGCCGA CGTCGAACAA
CTCGGCATGT ACAGCGAGTC CGGCGAGCAG ATCGCGATCC AGTCGCAGTC CACGTCGAAG
TTCCACGGTT CCGTCCCCGC GATGGTCGAA GAAGTCAAAG CCCTTCTCAC CGATGGCCGC
CGCGTTCTCT TCGCTGCCGC CAACACCGGC GAAGTCGAGC GCCTCGCGGA CATCTTCAGC
GAATACATGG TGCCCTTCCG CGTCGGTAGC CGCTCCACGC GCCCCGGCCA GGAAACCTAC
ATCGAGGAAC AAGGCTTCTT TGCCGAAGAC CTCTCCGCCA CCACGGTCGT CAAGGCCTAC
GTGCCCGAAG GCGTCGCGAT GCCCGAATCG CGCTTCGTCC TCTTCGGTAC GCGCGATCTC
TTCGACGAAT CCGAAGTTGC CTCGGCACAG CAGCCCAAAC GCTCGCGTTC CAAAGTATCC
GCGTTCCTCT CCGACTTCCG CGATCTCACC ATCAACGACT ACGTCGTCCA CGTCGAGCAC
GGCATCGGCC AATATCAAGG CCTCAAGGAA ATTGCCCAGG GCGATGGCGA GCCCGCCGAA
TTCATGATCC TCGAGTACGC CGAGGGTGCG CGCCTCTACG TTCCGCTCAC GCGTCTCGAC
CTCATCCAGA AGTACCGCTC GTCGGAAGGC GTGAAGCCCG CGCTCAATCG TCTCGGCACG
CAGCAATGGG CCAAGACGAA AGCGCGAGTA AAGAAGGCCA TGAAAGACAT GGCCGACGAA
CTCCTCAAGC TTTACGCCGC TCGCAAAACT GCCAAGGGCC ACGCCTTCAG TGCCACTGGC
CAATTCGAGC GCGAGTTCGA CGACGCCTTC GAATTCAACG AGACCGAAGA CCAGGAAAAC
GCCATCCGCG ATGTCCGCCA GGACATGGAG TCCGACACGC CGATGGACCG CCTGCTCTGC
GGCGACGTAG GCTACGGCAA AACCGAAGTC TCCATGCGCG CCGCCTTCAA GGCCGTTTCC
GACAACAAGC AAGTCGCGGT GCTTGCACCG ACGACAGTCC TCGCGTTCCA GCACTTCGAA
ACCTTCAAGC GCCGCTTCTC TGCCTTCCCC GTGAAGGTCG AGATGATCTC GCGCTTCCGC
ACCGCCAAGC AGCAGAAGGA AATCGTCGAG CGCGTCAACA ACGGCCAGGT GGACATCCTC
ATCGGCACCC ACCGCGTGCT CTCGAAAGAC ATCCACTTCC CCGACCTCGG CCTGGTCGTC
ATCGACGAAG AACAGCGCTT CGGTGTCCGC CACAAAGAGC GTCTCAAGCA ATTGCGCAAA
GAAGTGGACG TGCTCACCAT GTCCGCCACG CCGATTCCGC GCACCCTGCA CATGTCGCTC
CTCGGCCTGC GCGACATGAG CGTAATCGAA ACGCCGCCCA AAGATCGCAT GGCGATTCAG
ACGGTCGTCG CCAAGTGGGA CGAGAAGCTC ATCAAGAGCG CCATCGAACA GGAACTCGAT
CGCGGAGGCC AGATTTACTT CGTGCACAAC CGCGTCGAGA GCATCTACGA AATCTCCGAC
AAGATTCACG AGTTAGTGCC GAAAGCAAAG ATCCTAGTCG GCCACGGTCA AATGGGCGAA
GGTCAGCTCG AAGACATCAT GCTCAAGTTC ATGCGCCATG ATGCCGACAT CCTCGTCGCC
ACCACCATCA TCGAGAACGG CCTCGACATC CCGCTTTGCA ACACCATGAT CGTGAACCGC
GCCGATCGCC ACGGCCTTAG CGAGCTCTAC CAACTCCGCG GACGCGTCGG CCGCTCCAAT
CGCCGCGCCT ACGCGTACTT GCTTGTGCCT CCAGATCGCG AACTCACCGA ACTCGCGCGC
CGCCGGCTCG CGGCACTGAA AGAATTCAGC GACCTTGGCG CAGGATTCAA AATCGCGGCA
CTCGATCTCG AACTCCGTGG TGCCGGCAAC CTTCTCGGCG GCGAACAGAG CGGACAGATT
GAAGCTGTCG GCTTCGAGCT CTACACCACC ATGCTCGAGC GCACCGTGCG CGAGATGAAG
GGCGAGGTGC AGGAAGAACA GGCCGAGACG CAACTCAACC TCGGCCTCAA CATCCGCATT
CCTCCCGAGT ACATCAAGGA AGAAAACCAG CGCCTCCGCA TGTACAAGCG CGTCGCCGGC
GTGGAAGGCG AACCGCAGCT CAACGATGTT GCCGCCGAAC TTCAGGACCG ATACGGCGCG
CCACCCGCTC CCGTGCGCAA CTTGATCCAG TACGCGCGCC TGCGTTTGCT CGCCGAGCGC
ATTGGTATCG CCGGCATCGA TCGCCAGCGC GACCAGATCA ATATGCGCTT CACCGAGAAG
GCGCAGATCG ATCCCGAGAA GCTGGCGAAG TTTGTCGGAC GCACCAAGGG TGCGAAGTTC
ACGCCCCAGG GAATCTTGAA ATTCGCATTG AAGGCCATCA CGGCCGACGA AGTCCTAAAT
GGTCTGCTCG CGTTATTGCA GCAGCTTTCG GATGCCGCGG TAGCTAAAAT ACAAACGCCT
TCGTCGTAA
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| Protein sequence | MILPFVRELF ADVEKSPEFL RAATQVKSGT GRIRVSGLTP SARALHYALF SKATLKPLIV
VVPSNRAAEE LLPIVQAYCE LTGTAHADAV VMLPAYDVLP YENLSPHPEI QEARAAALWK
IVSGTARFVI APFVATAMHY RPAEFYFDLT KVINRGNSID SDELRAHLNT SGYSTVDVVE
MPGEYALRGG ILDIYPPESE HPVRIELFGD EVESIRKFDT ETQRSAGATD EVVLLPLSDT
PVREDILGSI HAKLSGRRLD ADEETLEAIA RAEGVTVFPG WEYYAGATAN QRLFDLLPNA
AVLRDDPVKI ESDFEAWWER VQQSHERSGV GHLVRPEDLL DSPDTWQQRI ASLPGADVEQ
LGMYSESGEQ IAIQSQSTSK FHGSVPAMVE EVKALLTDGR RVLFAAANTG EVERLADIFS
EYMVPFRVGS RSTRPGQETY IEEQGFFAED LSATTVVKAY VPEGVAMPES RFVLFGTRDL
FDESEVASAQ QPKRSRSKVS AFLSDFRDLT INDYVVHVEH GIGQYQGLKE IAQGDGEPAE
FMILEYAEGA RLYVPLTRLD LIQKYRSSEG VKPALNRLGT QQWAKTKARV KKAMKDMADE
LLKLYAARKT AKGHAFSATG QFEREFDDAF EFNETEDQEN AIRDVRQDME SDTPMDRLLC
GDVGYGKTEV SMRAAFKAVS DNKQVAVLAP TTVLAFQHFE TFKRRFSAFP VKVEMISRFR
TAKQQKEIVE RVNNGQVDIL IGTHRVLSKD IHFPDLGLVV IDEEQRFGVR HKERLKQLRK
EVDVLTMSAT PIPRTLHMSL LGLRDMSVIE TPPKDRMAIQ TVVAKWDEKL IKSAIEQELD
RGGQIYFVHN RVESIYEISD KIHELVPKAK ILVGHGQMGE GQLEDIMLKF MRHDADILVA
TTIIENGLDI PLCNTMIVNR ADRHGLSELY QLRGRVGRSN RRAYAYLLVP PDRELTELAR
RRLAALKEFS DLGAGFKIAA LDLELRGAGN LLGGEQSGQI EAVGFELYTT MLERTVREMK
GEVQEEQAET QLNLGLNIRI PPEYIKEENQ RLRMYKRVAG VEGEPQLNDV AAELQDRYGA
PPAPVRNLIQ YARLRLLAER IGIAGIDRQR DQINMRFTEK AQIDPEKLAK FVGRTKGAKF
TPQGILKFAL KAITADEVLN GLLALLQQLS DAAVAKIQTP SS
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