Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_4395 |
Symbol | |
ID | 4073301 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | + |
Start bp | 5218449 |
End bp | 5221088 |
Gene Length | 2640 bp |
Protein Length | 879 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637986428 |
Product | ABC efflux pump, inner membrane subunit |
Protein accession | YP_593469 |
Protein GI | 94971421 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCCGC GCCGGTTCTT CCTACGCAGC CGTCGTGATG CCGAGGTCAC GCAGGAAATC CAGACACACA TCGCGGAAGA AACCGCGGAA AACGTGGCGC GCGGGATGTC GGCGGAAGAA GCGCGGCGGC GCGCATATCT CAAGTTTGGT AATCCGGAGA TTGTTCGCGA GCAGGTGTGG CAGCAGAACA CGCTGACCCT GCTCGACAGC CTGTGGCGCG ACCTGAAGTA TGCCGCGCGA TCGTTGCGAC GCGCGCCTGC ATTTTCGGTG ATGGCGATCT TCGTGATGGC GCTCGGCATT GGCGGAACCG TCGCAATGTT TACCGTGGTG CGCAATGTGC TGCTCAATCC GCTGCCGTAT CCGGAGTCGC AAAACCTTTA TGCGCTGTGG GAGCACGAGG ACACCGGTAA TTTCAGCCCG AACCTTCCTG TGGCGGGCGG AAGTTTTCTG GAGTGGCAGA AGGCGGCCAA GGGGTCGGCG GAGCTGGCGC TGGTTTCGCC GTGGCAGGGC TACAACGTTT CGGCCGAGGG CGGCAAGCTG CCCGAGATGA TTGACTCAGC AAGCATCTCG TGGAATTTCT TTCGTGTGCT CGGGGTACAG CCCGCACTGG GGCGCGACTT CACCGCCGAC GACGATCGCA AGGAAGCGCC GGCCACGGTG ATTCTCGCGC ACTCGTTCTG GGTGCGGCGC TACAGCCACG ATCCCAACAT TTTGGGGAAG AGCATTTACC TCGACGCCAA GCCCTACACC GTGATCGGCG TGCTGCCGGA GTCATTCACG TTCTCGAGTG CGATGTCGCA AAGCAACGCG CAGGCGGTGT GGACGACGGT CGGCCATGAG ATGCCGGAGT TGCTCTCTAT CTACGATGAC CACGAATTCT TCGGTGTCGC GCGCCTGGCG AAGGGCGTGA CCTTCGCGCA ACTGATGAGC CGCGTGGATA CGGCGCAGAA GCAGGTGAAG GCCGAGCATC CGGGGGCGGC GGTGCATCCC GGCGCGATCG GCCACAGCAT GCTCGATGAT GCGGTGGCGA AATACAAGAC CCCGTTCTAT GCTCTGCTCG CGGCGACCCT GTGCGTGTTG CTGATCGCGT GCCTGAACGT GGCCAGCTTG CTGGTGGCGC GCATTGCCGC GCGCAGCAAA GAACATGCGA TCCGCGCCGC GCTCGGCGGC AGTCGCTTGC GCCTGTTGCG CGAACGGCTC ACGGAGAGCT TGCTGCTCTC TACCGCCGGC GGTGCGATCG GCGTGTTGAT GGCGTGGGGT GCTCTGCGCT GGCTGGTGCT TACGCGTCAC GACATCAACC GCATTGAGAC GATCCATCTC GACGGCTTCG CTTTCGCGTT CTCAGTGGGT GCGGTGTTGT TTGCCGCGTG CTTCTCGGCG CTGATTGCGT GGATGAGCGC GGACGACAAG CGCATTCTCG CGACGTTGCA GGAATCGTCG CGTTCGCACA GCGCGGGCGG AAAGCGCGCT ACGCTGCGGC GCGTGCTGCT GGTGGGTGAA GTGGGACTGA CCGTAGTGCT GCTGGTTGGC GCGGGACTGT TGCTCAAGAG TTATCTACGG TTGCGCAGCA CCGACCTCGG CATTCCCGTG GACAACGTGC TCACACTGCG CGTCATCCTT CCCGATGCGC GCTACAGCGG CGACGCCAAG CCGGCGGCGT TCTTCGAACA ACTGTTGCAG CGCGTGAAGA CGGTGCCGGG CGTGGAAGCG GCAGCGCTGA TCAGTCGTGC GCCAGGCCAG GGATGGGGCG GCGATTCACT GATGACGGTT GTCGAGCATC CGCCGCTGCC CAAGGGCGTG GGACTCGATT TGCAGCGGCG TGGCGCCGAT CCCGGATACT TTGCGGCGGC GAAAGTTCCG ATGCTTAAGG GGCGCACCTT CCGCGACGAT GAGCGCCTCG ATCATGCGCA GGTACTCATT CTCAGCGAAT CGGCCGTGAA ATTGTGCTTC CCCGCTGGCG ATGACCCGAT CGGCAAGCAC ATGACGTTCG GCGACCAGAA AAAAGCGTAC GAGGTGATTG GCGTGGTGGG CGACACGCGT TGGGACATCA CGACGCCCGC GATGCCCACG TTCTACCTGC CTATTTACAG CCACGCATAT ACCGGCACGA CGGTGATGGT GCGGGCGTCG CACAACGTGG AGTCGCTGGC GATGCCGATC CAACGCATCA TTGGCGAGAT GGATCCGGAC CTGCCAGTTT CCGGCGTGCT GACGCTTCAG CAGACGATTA GTCGTTCCAC GATGTCCTCG CAATTCGACT CGCTGCTGGT GCTGGCATTT GCTGCGATCG CGCTGGTACT GGCGGCGGCC GGTCTCTACG GGGTGCTCGC GTATCTCGTC ACGCAGCGCA CCGGCGAGAT CGGCGTGCGA ATTGCACTCG GCGCGCGGCG TGAGCAGGTG CTGGGGATGG TCCTTGTGGA TGGTCTGCGG CCAGCGCTGT TGGGGCTGGT GCTTGGGTTG GCGGGGAGTG CGGCAACGGC GAAGCTGATC GAATCCATGC TCTACCAGAC GAAGCCGTTC GATATCCCAG TGTTCGCCGC TGTGATCGTT ACACTGCTGG CGATGGCGGC GCTGGCGTGC CTGTATCCGG CGTGGCGAGC GTCACGGCTG GATCCGGCAC AGGCTCTGCG AATGGAATAG
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Protein sequence | MTPRRFFLRS RRDAEVTQEI QTHIAEETAE NVARGMSAEE ARRRAYLKFG NPEIVREQVW QQNTLTLLDS LWRDLKYAAR SLRRAPAFSV MAIFVMALGI GGTVAMFTVV RNVLLNPLPY PESQNLYALW EHEDTGNFSP NLPVAGGSFL EWQKAAKGSA ELALVSPWQG YNVSAEGGKL PEMIDSASIS WNFFRVLGVQ PALGRDFTAD DDRKEAPATV ILAHSFWVRR YSHDPNILGK SIYLDAKPYT VIGVLPESFT FSSAMSQSNA QAVWTTVGHE MPELLSIYDD HEFFGVARLA KGVTFAQLMS RVDTAQKQVK AEHPGAAVHP GAIGHSMLDD AVAKYKTPFY ALLAATLCVL LIACLNVASL LVARIAARSK EHAIRAALGG SRLRLLRERL TESLLLSTAG GAIGVLMAWG ALRWLVLTRH DINRIETIHL DGFAFAFSVG AVLFAACFSA LIAWMSADDK RILATLQESS RSHSAGGKRA TLRRVLLVGE VGLTVVLLVG AGLLLKSYLR LRSTDLGIPV DNVLTLRVIL PDARYSGDAK PAAFFEQLLQ RVKTVPGVEA AALISRAPGQ GWGGDSLMTV VEHPPLPKGV GLDLQRRGAD PGYFAAAKVP MLKGRTFRDD ERLDHAQVLI LSESAVKLCF PAGDDPIGKH MTFGDQKKAY EVIGVVGDTR WDITTPAMPT FYLPIYSHAY TGTTVMVRAS HNVESLAMPI QRIIGEMDPD LPVSGVLTLQ QTISRSTMSS QFDSLLVLAF AAIALVLAAA GLYGVLAYLV TQRTGEIGVR IALGARREQV LGMVLVDGLR PALLGLVLGL AGSAATAKLI ESMLYQTKPF DIPVFAAVIV TLLAMAALAC LYPAWRASRL DPAQALRME
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