| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4296 |
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| Symbol | |
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| ID | 4071869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | - |
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| Start bp | 5103453 |
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| End bp | 5105177 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637986329 |
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| Product | sigma 38, RpoS |
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| Protein accession | YP_593370 |
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| Protein GI | 94971322 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.939988 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCTCTCG ACGACAAGTA CGACGATATC AAAAAACTGA TTGATACCGG CAAGGAAAAG
GGTTACCTGA CGTACAGCGA GGTGAATGAT CTCATCCCGC ACGACGTTCA CTCGCCCGAC
GATCTTGATG ATCTCCTGAC GACGATCGGT ACGCAAGGCA TTGACGTTCT CGAAGGTCCG
GGAAAACTTC CCTCCGCCGC AGTTCTCGAC AAGCGCTATG ACGATGTCGA GGCCGGCGAA
GAGGAGATGG AACTCGACCT CACTCCGGGA GCGCTCGAAA AGACGAATGA CCCCGTGCGC
ATGTATTTGC GCGAAATGGG CACGGTACCG CTGCTGACAC GTGAAGGCGA AGTTGAAATC
GCCAAGCGTA TCGAGCGCGG ACAACTTCGC GTATTAAAAG CAATCTCGCG TTCTCCCATC
GTCATTCGCG ACATCATCGC GATTGGCGAA GACCTGAAGC GCGGCGTGCG CAGCATCAAG
GAAATCGTGA TCTTCGATGA AGAAGAAATC ACGGATGAAG TCCTTGCTGC TCGCCTGAAA
GACACCACCG GGCGCATCGA TGAGCTGAAC AAGCACTACA AGAAGAGTTC CCAGCTCGAG
CAGAAGCTTG AAGAGATTGC TCCCGGCGGC GTTAAGGAAA TCAAGGACAA GAAAAAAGCA
CGCGACGTGC GCAAGGTCCG TTGGACGCTG GGCCGCGAAT TGGTCTCGAT CTCGCGCATC
ATTCGCAAGA TCAACTTCAC CAACGTCGAA CGCAAGCGCT TGATCGATCG CGTGAGCAAG
ACGGTCGAGA ACCTGCGCAT TCTCGAGCGC CAGGTTTCGC ATCTCGAGCA TCGTGCCAAC
GAAACGCGTT CGGAAGAGAC GAAGAAAGAG CTCAAGAAGC AGAGCCGCAC CCTTAAGGGC
GACCTGGAGC GCATGGAGCA GGAGGCTGGC GTTTCCATCG CCGAGCTGAA GCGTACCCAG
CGCGAAATTA TCCAGGGAGA CATGGATGCC GAGCAGGCGA AGAAGGAGCT CATCGAAGCT
AACCTTCGAC TCGTCGTCTC GATCGCGAAG AAGTACACCA ACCGCGGACT CCAGTTCCTC
GACCTCATCC AGGAAGGCAA CATCGGCCTG ATGAAAGCCG TGGACAAGTT CGAGTACCGC
CGTGGCTACA AGTTCTCAAC GTACGCCACG TGGTGGATTC GCCAGGCCAT TACACGCGCG
ATTGCCGATC AGGCCCGCAC CATCCGTATT CCGGTGCACA TGATCGAAAC CATCAACAAG
CTCATCCGCA CCTCGCGTCA ACTGGTGCAG GAACTTGGGC GTGAACCGAG CAGCGAAGAA
ATCGCCAAGC GGATGGATAT CCCCGTGGCG AAGGTCCGCA AAGTGCTGAA GATCGCACAG
GAACCGATCT CGCTCGAAAC ACCGATCGGC GAAGAGGAAG ATTCACACCT TGGCGATTTC
ATCGAGGACC GCTCGATGGT TTCGCCGGCC GAGGCCGTCA TCAACGTGAA CCTCAAGGAC
CAGACAGCCC AGGTCCTGCG CACGCTCACC GCGCGCGAAG AAAAGGTCAT CAAGATGCGG
TTCGGACTCG AAGACGGTTC AGAGCACACG CTCGAGGAAG TCGGCCAGTC GTTCGCCGTT
ACACGCGAAC GCATCCGCCA AATCGAGGCG AAGGCGTTGC GCAAGCTGCG TCATCCGTCA
CGCTCGCGGA AGCTGCGGGC ATTTCTCGAT GGAGTGCGCG ACTAG
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| Protein sequence | MALDDKYDDI KKLIDTGKEK GYLTYSEVND LIPHDVHSPD DLDDLLTTIG TQGIDVLEGP
GKLPSAAVLD KRYDDVEAGE EEMELDLTPG ALEKTNDPVR MYLREMGTVP LLTREGEVEI
AKRIERGQLR VLKAISRSPI VIRDIIAIGE DLKRGVRSIK EIVIFDEEEI TDEVLAARLK
DTTGRIDELN KHYKKSSQLE QKLEEIAPGG VKEIKDKKKA RDVRKVRWTL GRELVSISRI
IRKINFTNVE RKRLIDRVSK TVENLRILER QVSHLEHRAN ETRSEETKKE LKKQSRTLKG
DLERMEQEAG VSIAELKRTQ REIIQGDMDA EQAKKELIEA NLRLVVSIAK KYTNRGLQFL
DLIQEGNIGL MKAVDKFEYR RGYKFSTYAT WWIRQAITRA IADQARTIRI PVHMIETINK
LIRTSRQLVQ ELGREPSSEE IAKRMDIPVA KVRKVLKIAQ EPISLETPIG EEEDSHLGDF
IEDRSMVSPA EAVINVNLKD QTAQVLRTLT AREEKVIKMR FGLEDGSEHT LEEVGQSFAV
TRERIRQIEA KALRKLRHPS RSRKLRAFLD GVRD
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