| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4194 |
|---|
| Symbol | |
|---|
| ID | 4072153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 4968550 |
|---|
| End bp | 4970097 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637986225 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_593268 |
|---|
| Protein GI | 94971220 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.233641 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0358885 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGGG TGCCCCTGCT ACTCGTCCTG CTCTGCGCAC TCCCGCTCTT CGCCCAATCG
CCAACACTCG AACAACAAGC TCTCGATGCC TGGCGCACCT ACGACTACCC CACCGCCGAA
CGTCTTTACC GCCAGGCTCT CACCGCGAAT CCTACTTCCG GCGACGCCCA CGGTGGACTC
GTCCGCACGC TCCTGAACGA AAAGAATCTC CAAGCGGCCC GCGATGCCGC GAATACCGCT
CTCCGCGCCG CCCCCGACTC CGCAGCTGTC CAGGCCGCTT CCGGCGATGT CTTCTTCCGC
GATGGACGGA TCGAAGATGC CGAAATCGCC TACCGGCGTT CCGCAAAACT CGACGACAAT
TGCGCCCGCG CCTGGCACGG CCTCTCGCAG ATCGCGCAGA TCACCTCGAA CTACCGCAGC
GCCCGCCGCG ACATCTTCAA AGCCCACGAA CTCGATCCCA AAGATCCTGA AATCTACGAA
TCCTGGGCGA GTCGCTTGCC GCGACCGGAG CGCCGCAAGG CCGTCGAATA CCTCGTGGAC
CACCACGGCC ACCTCGATCC GGACCGTCTC AACATCCTGC AATCGCGGCT CGCATGGCTT
ATCGTCCTTG GCAACAAAAC CGCGTGGAAG CTCGTCAGCA CCAGGGAAAC CGCCAAGCTG
AGGCTTGACC ACATCGTTTC TGCCGCGCAT CTTGGCGACG GCCGTTTCAC CACTCCGCCG
CGCGAAGGCG CCGTCGCCAT ACATGTCCGC TTCAACGACA AGAAGACGGT CTCCCTTCTC
CTCGACACCG GCGCCAGCGG CATCGTGCTG CGCAAGAGCG ACGCCGCCAA AGCCGAGATC
AAACAGGTTT ACGACATCGC CACGAAAGGT ATCGGCGACG AAAAGCCCGC TAACGGATAT
CTCGGCTGGG CTCACGACGT AAAGATCGGC CCCATCGAAT TTGAGAACGT TCCTGTCACG
GTCCTCGACG CAAGGTTCCC CGAAGGCTCC GACGGATTGA TGGGCATCGA TGTCTTCGAG
CACTTCCTCA TCACCCTCGA CATCAAGAAC TCCGAGCTAA GTCTCGCGCC TCTGCCCGAG
ATTCCCGCCA ACCTTCGCGA CGAAGCCGGC GCCGCCGATC GTTATGTCGC GCCGGCAATG
CAGTCGTTCG ACCGGGTCAT GCACCTGGGC GCGCACATCC TCGTCTCCAC CAGTGTCGAC
CAGCAACCCG CCGGCCTCTT CTTCCTGGAT ACCGGCGCCT TCGACACCCA GATCGATCCA
AATAACGTCT CCAAATCCAA ACTTCAGCCC GCCCCCGGCT TATCTGTGCG CGGCCTCTCC
GGTAACGTTC GCGACGTTTA CGTCGCCAGT AACGTTCAGA TCCAGTTCGG CCGCTTCACC
CAGGACAACT TCCGCATGGT CGCCATCAGC ATGGATAAAC TCAGCGAAGG CGAAGGCATC
GCCCTCGGCG GCATCCTGGG CTTCCCACTC CTAAGCCAGT TCCGCCTGAC CATCGACTAC
CGCGACGGCC TCGTCAACTT CGACTACCAC AACTCGAATA AACGCTGA
|
|---|
| Protein sequence | MPRVPLLLVL LCALPLFAQS PTLEQQALDA WRTYDYPTAE RLYRQALTAN PTSGDAHGGL
VRTLLNEKNL QAARDAANTA LRAAPDSAAV QAASGDVFFR DGRIEDAEIA YRRSAKLDDN
CARAWHGLSQ IAQITSNYRS ARRDIFKAHE LDPKDPEIYE SWASRLPRPE RRKAVEYLVD
HHGHLDPDRL NILQSRLAWL IVLGNKTAWK LVSTRETAKL RLDHIVSAAH LGDGRFTTPP
REGAVAIHVR FNDKKTVSLL LDTGASGIVL RKSDAAKAEI KQVYDIATKG IGDEKPANGY
LGWAHDVKIG PIEFENVPVT VLDARFPEGS DGLMGIDVFE HFLITLDIKN SELSLAPLPE
IPANLRDEAG AADRYVAPAM QSFDRVMHLG AHILVSTSVD QQPAGLFFLD TGAFDTQIDP
NNVSKSKLQP APGLSVRGLS GNVRDVYVAS NVQIQFGRFT QDNFRMVAIS MDKLSEGEGI
ALGGILGFPL LSQFRLTIDY RDGLVNFDYH NSNKR
|
|---|
| |