| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4155 |
|---|
| Symbol | |
|---|
| ID | 4072114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 4919970 |
|---|
| End bp | 4922123 |
|---|
| Gene Length | 2154 bp |
|---|
| Protein Length | 717 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637986186 |
|---|
| Product | transcriptional regulatory protein-like |
|---|
| Protein accession | YP_593229 |
|---|
| Protein GI | 94971181 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.297616 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGGGCT CGTTCCATAT CGCAGATTGG GAGGTCGAGC CTCAGATCAA CCAAGTAAGG
CGTCAGAACC ACTCCTTCCA TCTTGAACCG AAGGTGATGC AAGTCCTGGT GGAGTTGGCC
GCACACTCGG ATGAAGTTCT CTCCAAGGAA CATCTGATCC ACGCAGTTTG GTCGGACACG
TTCGTCAGCG ACGACGTGTT GACGCGTTGC ATCTCGGAGA TCCGGCGAGT GCTGGACGAC
GATGCGCGCG CGCCGAAGAT CATCCAGACG ATCCCGAAAT CGGGCTACCG GCTGATTGCG
CCGGTGGTGT TCGACAAGGC CGCGCCTCCA AAGAATGGGT CGTCGAATGG GTCGACGGCA
ACGGTTGAGG CGGCGACGGT GGAGACGCCT CCTCTGAAGA CCGCTGAGAC GCCGCGGAAG
AACCTGGCGC CGTGGATTGT TGCGGTCGGC GTATTGGCGA TTGCCGTGGT TTACTTCGCG
ATACGAGCTA CTCGTCCGCC GGTAGCCCAA CCGGGGCCGG AGGAGAGCTA CAGGACGATT
CCCTTCACGT CGTATCCGGG ATCGCAGACG CAACCGGCGT TTTCGCCGGA TGGGAACCAA
GTGGCGTTCG TGTGGAATGG CGAGGGCGGA GAGAACCGGA ACATCTACGT AAAGATCATC
GGGTCGGAGA CACCGCTGCA GCTTACGCAC GACGCCGGGC AGGATTACAG CCCGACGTGG
TCGCCGGATG GACGGTCCAT TGCGTTCCTA AGATATACGG ACACGGACCG CGGCATCTTT
ATGGTGCCGG CGCTGGGTGG GGCGGAGCAC AAGGTTTTTA CGCCGACGGG GATCGTGGAG
TGGGAGCGCA ATGCGCTCTC GTGGTCGCCG GATGGAAAAC GGCTGATCTT CTCCGATGGG
AAGAGTGCGA ACTCGCCAAG CTCGATTTTC GAACTGGATC TGGAAACGGG GACGGCAAAG
GCGATTACGT CACCACCGAA GTTGTGGGAC GGCGACAGCG GGCCGGCGTT CTCACCAGAT
GGAAAGAAGA TTGCGTTCGT CCGCGGGTCT GAGGGATGGG TACAGGACCT GTACGTGATG
GATGCGGCGG GCGGCGAACC AACGCGACTG ACGAACGATG GCCGCATGAT GGCGAGCATC
AGTTGGGCGG CGGATGGGAA GTCGATTGTG TACTCGTCGA ACCGTGCGGG AAAGTTTTCG
CTATGGCGGA TTCCGGCGAC AGGCGGCACG GCCGAGCGCA TTGGCGTGGG CACAGAAGAT
GCATTCGGGC CTAGCGTTTC ACGGAATGGC GATCACTTGG CTTACACGCA GGGGAGTTCG
ATTTACGGGA TCCACCGCCT GGATTTGAAA GCACCAAAGA GCGCGGCGAC GACGATCTTG
AGTTCGACGC AGCAGGATTC TGCGCCGAAG CTTTCGCCGG ATGGAAGTCG CGTGGCGTTC
CAGTCGTGGC GATCGGGGAC GCAGGAAGTT TGGGTTGCGG GCAGCGATGG GAAAAATCCG
GAGCGGGTGA CTTCGTTTGA GAAGTCGCTG ACGGGGAGCC CTTCGTGGTC GCCGGATGGA
AAGCAGTTGG CCTTCGACGC GCGGCCGGAG GGACGTTCGC ACATCTATGC GCTGCGATTG
GATGGCGGGC AGCCGAAAGC CGTGACGGAC GGGGATTTCA ACGACATTCT GCCGAATTGG
TCGAGCGATG GAAAGTGGGT TTATTTTGCG TCGAACCGCG GCGGGGCTTG GCAAATTTGG
AAGGCGCCGA GCGAAGGCGG AACTCCGCAA CAGGTTACGA AGCATGGCGG ATTCGTTGGG
CAGGAATCCT TCGACGGCAA GTGGCTGTAC TTCGCGAAGC CGGACGCGGT GGGACTGTTC
CGGATGCCGG TAAGCGGTGG CGACGAACAG AAGATCATGA ATCAGCCGCC GGAAGCGTAC
TGGGGATATT GGTCGCTGAC CCCGAATGGA ATTTATTACC TGAACGAGAC CGGCGGGAAG
ATGTCGATTG AGTTCGCCGA ATTGGATGGG ACGCATCCGA CTCGCGTGCA TGTACTTGAA
CGAGGGCTGC CGCCGTTTTC GGGGCTATCG GTTACGCCGG ATGGGAAGAC GCTCTTGTAC
AACGATCGGG TTGAGGCGGG GAGCCATATT ACGCTGGTGG ATGGGTTCCG ATAG
|
|---|
| Protein sequence | MKGSFHIADW EVEPQINQVR RQNHSFHLEP KVMQVLVELA AHSDEVLSKE HLIHAVWSDT
FVSDDVLTRC ISEIRRVLDD DARAPKIIQT IPKSGYRLIA PVVFDKAAPP KNGSSNGSTA
TVEAATVETP PLKTAETPRK NLAPWIVAVG VLAIAVVYFA IRATRPPVAQ PGPEESYRTI
PFTSYPGSQT QPAFSPDGNQ VAFVWNGEGG ENRNIYVKII GSETPLQLTH DAGQDYSPTW
SPDGRSIAFL RYTDTDRGIF MVPALGGAEH KVFTPTGIVE WERNALSWSP DGKRLIFSDG
KSANSPSSIF ELDLETGTAK AITSPPKLWD GDSGPAFSPD GKKIAFVRGS EGWVQDLYVM
DAAGGEPTRL TNDGRMMASI SWAADGKSIV YSSNRAGKFS LWRIPATGGT AERIGVGTED
AFGPSVSRNG DHLAYTQGSS IYGIHRLDLK APKSAATTIL SSTQQDSAPK LSPDGSRVAF
QSWRSGTQEV WVAGSDGKNP ERVTSFEKSL TGSPSWSPDG KQLAFDARPE GRSHIYALRL
DGGQPKAVTD GDFNDILPNW SSDGKWVYFA SNRGGAWQIW KAPSEGGTPQ QVTKHGGFVG
QESFDGKWLY FAKPDAVGLF RMPVSGGDEQ KIMNQPPEAY WGYWSLTPNG IYYLNETGGK
MSIEFAELDG THPTRVHVLE RGLPPFSGLS VTPDGKTLLY NDRVEAGSHI TLVDGFR
|
|---|
| |