| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4106 |
|---|
| Symbol | |
|---|
| ID | 4072297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 4863201 |
|---|
| End bp | 4864112 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637986137 |
|---|
| Product | signal peptide peptidase A |
|---|
| Protein accession | YP_593180 |
|---|
| Protein GI | 94971132 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.827209 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.751736 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGCA ATCGTGGTTC ACGCGTGTTT TTGTGGGTTG CACTTGCCGG TGGCGCATTT
TTTCTCTTCG TTGCAGCCAT TTTCGTGCTG GTGTACGTTA GCGTCCGCGC CGATGACCAC
GCACAATTTA CCGGGTTCGG CGACCGCATT GCGGTAGTGG ACCTGGAAGG CGTGATCGTT
GATCCCAAGA GCGTTGTCGC GCAATTGAAG AAGTATGGCG ACGATAGCTC GATCAAAGCC
ATCATCCTGC ACATCAATTC GCCCGGCGGT GGCGCTGCGG CTTCGGAGGA GATTTACCGC
GAAGTGCGGC GCGTGCGCGA TGAGAAGCAC AAGCGCATTG TCGCTTCCAT CGAGACCGTG
GGCGCGAGTG GCGCGTACTA CGTGGCTTCC GCGACGAACA AGATCTACGC GAATGAAGCG
AGCATCGTGG GCAGCATCGG CGTGATTGCG GAGTGGTACA ACTACGCCGA CCTGTTGAAA
TGGGCCAAGC TCAAGGAAAT CACGATGAAA GCTGGTGAAT TCAAAGACAC CGGCTCGCCG
ACGCGCGACA TGACCCCGGC CGAGAAGGCC TACATGCAGG CGTTGATTGA CGACATGCAT
TCGCAGTTCA TTCATAACGT GGCGACTGGA CGCAAAGTGA AGGACGAGGA CATTCGTCCC
ATTGCGGACG GACGGGTGTG GACCGGACGC CAGGCGCTGC CGATGAAATT GATCGACCAG
ATCGCGGATT TCCAGGCGAC CGTGGCGGAT ACGGCAAAAA GCGTCGGAAT CAGCGGCGAA
CCGACCTTGG TGACCCCGGA ACGGGAACGT AAGTCGTTGC TGGATCTGAT GTTCGGCGAT
GTGTCGGACC TGATTCCGGA CCGTGCCAAG CTGATGCAGA CGAACGTCGG CTTTTACTAC
CTCTGGAAGT AG
|
|---|
| Protein sequence | MASNRGSRVF LWVALAGGAF FLFVAAIFVL VYVSVRADDH AQFTGFGDRI AVVDLEGVIV
DPKSVVAQLK KYGDDSSIKA IILHINSPGG GAAASEEIYR EVRRVRDEKH KRIVASIETV
GASGAYYVAS ATNKIYANEA SIVGSIGVIA EWYNYADLLK WAKLKEITMK AGEFKDTGSP
TRDMTPAEKA YMQALIDDMH SQFIHNVATG RKVKDEDIRP IADGRVWTGR QALPMKLIDQ
IADFQATVAD TAKSVGISGE PTLVTPERER KSLLDLMFGD VSDLIPDRAK LMQTNVGFYY
LWK
|
|---|
| |