| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4068 |
|---|
| Symbol | |
|---|
| ID | 4072490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 4812936 |
|---|
| End bp | 4815137 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637986099 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_593142 |
|---|
| Protein GI | 94971094 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.288798 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCTAC GTCGCTTTTG CTGCTGGATT GTTCTTTTAA GTGTTCTCAT TTCGATTCCC
TCAACGTCAG GTGCAGTTCA ACCGGGGAGT GCAGCCCCAG CGCCGCGCGT CGGGGTTGCG
CTTGAGGGCG GAGCTGCGCT TGGTCTGGCT CACATCGGCG TACTGCAGTG GATGGAAGAG
CACCACATTC CCATCTATTA CGTCGCCGGA ACCAGCATGG GCGGCCTTGT CGGTGGCATG
TACGCGACGG GAAATTCGCC GGAAGAGATG AAGGCGTTCA TCAGCAAGAT CAACTGGGAC
GATGTTCTAG CCGGTCAGAC CGAATACCAG AATCTGACCT ATCGGCGGAA GGAGGACGCA
ACCCAGTATC CGAACCGCCT GGAGTTCGGC ATTCGCGATG GAGTCCGCTT TCCTGAAGGT
TTCAACTCCG GCCACCAGGT TGGGCTCATC CTGGATCAAA TCGCGCTGCC GTACTCGGAG
ATGAAGTCGT TTGATGATCT GCCCATTCCG TTTGCGTGCG TCGCAACCGA CCTCGTTAGC
AAGAAGCAAC ACGTTTTTCG CGAAGGATCT CTCGGCCAGG CTCTCCGCTC CACCATGTCA
ATGCCGGGTG TGTTCAACCC AGTACGGACG GACAGCCAAG TGCTTGTGGA TGGCGCGCTG
TTGGAGAACC TGCCGGTTGA TATCACGAAA CAACTCGGCG CAGACATCGT GATCGCCGTC
CATCTGGAAG TTAAGCCGAT GAAAGCGACA GATCATCTTT CGTCGTTCGG CGTGCTGGGA
GAATCACTCG CGGTGATGAT TGCTGCCAAT GAGTTGCGCA GCATGGAAAA AGCAGACGTC
CTGGTGACAG TCCCACTCGC CGGATTCGGC GGCATGAACT TCAGCAAGGG TGAAGAAATT
ATCAAGCTCG GGTACGAGGC AGCCGCGAGC AAGGCCGCCA TCCTGAGCCG GTTCAGCGTT
GATGACGCCA CCTGGCAGGC GTATGTGTCG CAACGGGCGT CGCGTAAGCA AACGGCTCCT
GTGCCACAGT TTGTCGAGGT GACTGGCACC AAGCCGAAAC TCGCGAAGGA AATTGAGCAC
CGCCTAGCCG ATGACGTCGG CAAGCCCGTG GATACGGCGC GAATAGATAC CGATCTTAAT
TACCTCACGG GTGTGGGTCG CTTCGACCGC TTGGGCTATT ACATGGTCGA AAAAAATGGC
CAGCAAGGGT TGATGATTCG CGCGGATGAG AAAGAGTATT CGCCGCCGAT CGTCCGTCCT
CTGCTGGATA TTGACGGTAC CAACTACGAC CGCCCCCAAT TCATCTTCGG CGGAAGGATC
ACGCTTCTCG ACGTCGGCGG GTTCGGGTCT GAGTGGCGTA ACGACATCGA ATTCGGCTCA
GAGTACGGAG TTCATACCGA GTACTTCCAC CCTGTCGCTG AGAGCCGCTT CTTCGTTGCT
CCCTACGCAT TCGCATTCAA TCGTGCGCAG GACTACTACC ATTACTCGAC CTTGACTGCC
GAATACCGCG ATCGAGATCT GGGAGGAGGG CTCGATCTCG GGTACATGTT CAGCCGGAAA
GACGAATTGC GCGTCGGGTA TGAGGCCGCG TATCGGCGCT TAACACCTGC CGTGGGGACT
GCACTGTTTG GAACCCTCGA AGGAAGAATG GGCACCACAA CCTTGCAGTT CAATCACATC
GGGCGCGACG AGCCCGTTAT ACCAACCCGC GGCTTCGATT TGAACTTCAC CAGTTTCTTC
CGTGACGCGT CTCCTGGCGC CACCGAGAAT TACCCGGGGG TGCAGACGCG CTATACGTGG
TTCGTTCCGA TTTCCAAGAA ATCCTCTGTC TTCACAACCG GGTTCGCCGG ATCGACCTTT
GGGTATACGC AGACTGGCGT TCCACCCTTT TCGCTTGGCG GAAGCCGGGA CCTTTTGGCG
TACGGCCAGA ACGAATTACT GACGCAACAG TTCTATCTGT TCAAGGCAGG GTATATTCAC
CCGCTCTGGT ATCTGCCCCC GATGTTCGGG AAAGATATTT CTGTAATCGG GACTTATGAA
GTCGGGAAAG TCTTTTACAC CCAACCGGGC ACCTCAAGTA TCCCGACTGA TTTTGCTGCC
GCTCTGGTCG TTGACAGCCT GTTCGGCCCC GTGGAGGCCG GTTACAGTTA CGGGGCAACT
GGGCACCGCA GGTTCTTCTA CCGCATAGGA CGTATCTTTT AG
|
|---|
| Protein sequence | MSLRRFCCWI VLLSVLISIP STSGAVQPGS AAPAPRVGVA LEGGAALGLA HIGVLQWMEE
HHIPIYYVAG TSMGGLVGGM YATGNSPEEM KAFISKINWD DVLAGQTEYQ NLTYRRKEDA
TQYPNRLEFG IRDGVRFPEG FNSGHQVGLI LDQIALPYSE MKSFDDLPIP FACVATDLVS
KKQHVFREGS LGQALRSTMS MPGVFNPVRT DSQVLVDGAL LENLPVDITK QLGADIVIAV
HLEVKPMKAT DHLSSFGVLG ESLAVMIAAN ELRSMEKADV LVTVPLAGFG GMNFSKGEEI
IKLGYEAAAS KAAILSRFSV DDATWQAYVS QRASRKQTAP VPQFVEVTGT KPKLAKEIEH
RLADDVGKPV DTARIDTDLN YLTGVGRFDR LGYYMVEKNG QQGLMIRADE KEYSPPIVRP
LLDIDGTNYD RPQFIFGGRI TLLDVGGFGS EWRNDIEFGS EYGVHTEYFH PVAESRFFVA
PYAFAFNRAQ DYYHYSTLTA EYRDRDLGGG LDLGYMFSRK DELRVGYEAA YRRLTPAVGT
ALFGTLEGRM GTTTLQFNHI GRDEPVIPTR GFDLNFTSFF RDASPGATEN YPGVQTRYTW
FVPISKKSSV FTTGFAGSTF GYTQTGVPPF SLGGSRDLLA YGQNELLTQQ FYLFKAGYIH
PLWYLPPMFG KDISVIGTYE VGKVFYTQPG TSSIPTDFAA ALVVDSLFGP VEAGYSYGAT
GHRRFFYRIG RIF
|
|---|
| |