| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4056 |
|---|
| Symbol | |
|---|
| ID | 4072478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 4796853 |
|---|
| End bp | 4797968 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637986087 |
|---|
| Product | L-alanine-DL-glutamate epimerase fmaily protein |
|---|
| Protein accession | YP_593130 |
|---|
| Protein GI | 94971082 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.24697 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.156881 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGTA GGGAACTCTT GCAACTCTCA ACCGCCGCGG GAGCAGCGCT TCTGCTGAGC
AATTCTGCGC TTGCCCAGGC ATCGCAATCT ACGGACGGTC ACTGGCACAC CAGTGTTGAG
CGGCTGAAGC TGCGCCATAC CTGGACGACC ACGATGTCCA GCAGCGAATA TCGTGACACG
CTTCACGCCC GCTTTACGAG CGACGGTGTT GTCGGCTACG GCGAGGGTGC GCCGATCGTT
CGATACCGCG AGGACGCGGC CACTGGCCAA AAAGCCCTCG AGTCGCAGAT GGCCTTTCTG
AACGCCGTCG ATCCGTGGCA TTTCGAGAAA GTCATGGCTG AACTGGCGCA GAAGATGGAG
GGTAATTTCG CTGCGAAGGC TGCCATCGAT ATTGCCCTGA TGGATTGGGC GGGCAAGCGC
CTCAATGCGC CGATCTATCG CATGCTCGGC CTTGATGCCG CTGACGCGCC GGTCACGACG
TTTTCCATTG GAATCGACAC TCCTGAAATT ACGCGGCAGA AGGTGCGCGA GGCCGAGGAA
TTCCCGGTCC TCAAAATCAA AGTTGGCCTC AAAACCGACG AGGCCACCGT CGAAGCTGTT
CGGAGTGTCA CGAAGAAGCC GCTGCGCGTA GATGCCAACG AAGGTTGGAC AGATAAGGAA
GAAGCTGTTC GCAAAATCAA CTGGCTCGAA TCGCAAGGTG TCGAGTTCGT GGAGCAGCCT
ATGCCGGCGC ACATGATCGA AGAGACGCGC TGGGTACGCA GCAAGGTACA TCTTCCCATT
CTTGCCGATG AAGCCGCCGT GAACGCGCAT GCAATTCCCG GGCTGATGAA CGCTTATGAC
GGCATCAACG TGAAACTCGA TAAATGTGGC GGCATCCAGC AGTCGCTAAA GATGATCAAC
GTTGCGAAAG CGCTTGGCAT GAAGACGATG CTCGGCTGCA TGGTTTCCAC TTCCGTCAGC
GTGACCGCGG CTGCTCACCT CTCGCCACTC GTGGACTACG CCGATCTAGA TGGCAATTTG
CTCATTGCCA ACGATCCGTT CACAGGCGTC AAAGTTGAAA AAGGAAAGCT GGTGCTGCCG
AACGGCCCGG GCTTGGGGCT TACAAAGAAC TCTTAG
|
|---|
| Protein sequence | MNRRELLQLS TAAGAALLLS NSALAQASQS TDGHWHTSVE RLKLRHTWTT TMSSSEYRDT
LHARFTSDGV VGYGEGAPIV RYREDAATGQ KALESQMAFL NAVDPWHFEK VMAELAQKME
GNFAAKAAID IALMDWAGKR LNAPIYRMLG LDAADAPVTT FSIGIDTPEI TRQKVREAEE
FPVLKIKVGL KTDEATVEAV RSVTKKPLRV DANEGWTDKE EAVRKINWLE SQGVEFVEQP
MPAHMIEETR WVRSKVHLPI LADEAAVNAH AIPGLMNAYD GINVKLDKCG GIQQSLKMIN
VAKALGMKTM LGCMVSTSVS VTAAAHLSPL VDYADLDGNL LIANDPFTGV KVEKGKLVLP
NGPGLGLTKN S
|
|---|
| |