| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4006 |
|---|
| Symbol | |
|---|
| ID | 4071142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 4732716 |
|---|
| End bp | 4733699 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637986033 |
|---|
| Product | ABC sugar transporter, periplasmic ligand binding protein |
|---|
| Protein accession | YP_593080 |
|---|
| Protein GI | 94971032 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.82922 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGCAC CCAAGAAAAT CGCTCTGACA CTTATTGCCG CAGCCTCCTG TCTCCTTGCC
GGCTGTGCCA AGCATGACAA CGACGAGAAG TACATCCTGG TAACGGTCAA TTCGAAGGTT
GAGTATTGGA AGACCGCGCA GGCGGGCCTG ACCAAAGCCG CTGCGCAATA CGGCGTGAAA
TGGGACGTCC GCGGTCCTGA AAACTATGAT CCCCAAGCGG AGGTGCAGGA GTTCCGCAAT
GCTGCGGCAC AGAAACCTTC CGGCATCCTG GTGTCCGTCG CCGATGCTTC GCTGATGCAA
CCGGCAATTG ACGAGGCTAT TAACGCAGGC ATTCCCGTCC TCACCATCGA TTCCGATGCC
CCGAAGAGCA AGCGCCTTTA CTTCATCGGT ACCAACAACC GCCAAGCCGG TACGCTCGGC
GCAAAACGCC TGGTCGAGAA GCTTCACGGG AAGGGCAATG TCGTCTTCTT CACCATGCCC
CAACCGAACC TCGACGAACG GTTAGCGGGC TATAAAGACG TTCTCTCTGA CAATCCCGGT
ATCAAGATCG TGGAGGTCGT GAACATCAAA GGTGATTCCG GCAATGCCTT TGACCGCACC
GCGCATTATG CTGGCGCCAA AGATGCTCAG AAAATCGACG CCTTCGTCTG CCTGGAGGCG
ACGTCGGCGA AGGATGTCGC GCTTGCGCTG AAACGCGAAA ACGTAACCGA CCGGCTGGTA
ATTGCAATGG ACGTTGATCC CGCTACACTC GACCTCATTA AGTCAGGCGT GGTGGATGCG
ACCATTGCGC AGAAGCCCTA CACCATGGCG TTTTATGGAC TGAAGGCCCT CGATGAGATA
CATCACGGAA AGCCAGATCT CACCAAGGAC TACTCGTTCG ACTCGTTCTC GCCATTCCCA
GCGTTTGTCG ATACCGGCAC CTCAGTTGTT GACAAGACAA ACGTGGATCT CTATCTGCAA
GCGCGAGCTG CGAACGCAAA ATAA
|
|---|
| Protein sequence | MSAPKKIALT LIAAASCLLA GCAKHDNDEK YILVTVNSKV EYWKTAQAGL TKAAAQYGVK
WDVRGPENYD PQAEVQEFRN AAAQKPSGIL VSVADASLMQ PAIDEAINAG IPVLTIDSDA
PKSKRLYFIG TNNRQAGTLG AKRLVEKLHG KGNVVFFTMP QPNLDERLAG YKDVLSDNPG
IKIVEVVNIK GDSGNAFDRT AHYAGAKDAQ KIDAFVCLEA TSAKDVALAL KRENVTDRLV
IAMDVDPATL DLIKSGVVDA TIAQKPYTMA FYGLKALDEI HHGKPDLTKD YSFDSFSPFP
AFVDTGTSVV DKTNVDLYLQ ARAANAK
|
|---|
| |