| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3772 |
|---|
| Symbol | |
|---|
| ID | 4071056 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 4460021 |
|---|
| End bp | 4460566 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637985795 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_592846 |
|---|
| Protein GI | 94970798 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.17734 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.182511 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCAATTA GCAATTGTCC CGCTAGTCTC CCCAAGATTA AGCGGAGGGA TTTTGAGTTG
AAGAAACAAA AAGGCTTTTC TCTCATTGAG CTCTTGATCG TGGTTGCGAT CATCCTGATC
ATTGCTGCGA TCGCAATTCC GAACCTGCTG CGTTCCCGCA TGGCTGCCAA CGAAGCATCG
GCTGTCGGCT CGGTTCGCAC CATTAACACA GCGGAAGTTA CATATTCGTC CGCGTATCCT
GACGTGGGCT TCACGCTCAC TTTGTCGCGG CTGGGTGGAC CGACGGGGAC ATGCGCCACG
GGCGGTTCCG GCGCGACCTC GACCCAGGCT TGCCTGATTG ATAACGTGCT TGGCGCCGGC
ACCAAGAGCG GCTATACGTT TGTCCTTAGC GGCACGGCTG CGACTCCGCA GACGACCTTC
ACCTTGAAGG CCAGCCCGGT AACGGTTGGC TCCAGCGGTC AGCGTGGTTT CTACACTGAC
CACACGGGTG TGATCCGGTA CAACCAGAGC GGCTCGGCGA CCTCGACCGA CAACCCGCTG
CAGTAG
|
|---|
| Protein sequence | MSISNCPASL PKIKRRDFEL KKQKGFSLIE LLIVVAIILI IAAIAIPNLL RSRMAANEAS
AVGSVRTINT AEVTYSSAYP DVGFTLTLSR LGGPTGTCAT GGSGATSTQA CLIDNVLGAG
TKSGYTFVLS GTAATPQTTF TLKASPVTVG SSGQRGFYTD HTGVIRYNQS GSATSTDNPL
Q
|
|---|
| |