| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3512 |
|---|
| Symbol | |
|---|
| ID | 4072771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 4149774 |
|---|
| End bp | 4150661 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637985535 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_592587 |
|---|
| Protein GI | 94970539 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.862108 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAGA AAAAATTCCT CGCAGAACGA TTTGAAGAGA ACCGCAGTCA TTTGCGCGCG
GTGGCGTACC GGATGCTGGG CTCGGCGACT GAGGCCGAGG ATGCTGTGCA GGAAGCATGG
CTGCGCCTGA ATCGCGCGGA CACGCAACAG GTGAATAACC TGAATGCGTG GCTGACGACG
GTGGTGGCGC GGGTATGTCT GGACACGCTG CGCTCGCGGA AAGCGCGGCG CGAGGAAGCG
CTGGATACAG AAGTTACGGA GCCGGTCGCG TCGACTCAAA AAAGAAACAA TCCAGAGCAG
GAAGCGATGC TCGCAGACTC GGTAGGAATC GCGCTGCTGG TGGTGCTGGA CCGGCTGAGT
CCGGCGGAGC GGCTGGCGTT TGTTTTGCAT GATTTGTTCG GGCAGTCGTT CGAGGAAGTT
GCGGCGGTGT TGGACAAGAC GCCGGCTGCG GTGCGTCAGC TTGCGAGCCG CGCGCGTCGC
AGAGTTCAGG GGCCGCCGGC GATTGAACGC AACGTGCTCA ATGCGCATCG GCGAGTGGTG
GATGCGTTTC TTACGGCGCT GCGGGCGAGG GACTTTGAAG GATTGGTCTC GGTGCTCGAT
CCTAATGTCG TGGTGCGCAT TGATAAATTC TCAGCGACTG GTGGGAAGGA CATCGAAATT
CGCGGCGCCG AAACTTGGGC TCGTGGTGCG ATCCAATTCG CAGAAGGCGC ACGCTTGGCG
CGGACGGTGT TGGTGGATGG CGAAGTCGGT GTGGTGATGG CGCCGCGTGG CAAACTATTC
CGGGCTGTGC GTCTCTCGAT TTCGGATGAG GGACGTATTC GCGAGGTAGA GATCATCGGG
GAGAAAGAGC GGCTCGCGGT GATGGATGTA CAGCTACTGC CGGAGTGA
|
|---|
| Protein sequence | MDEKKFLAER FEENRSHLRA VAYRMLGSAT EAEDAVQEAW LRLNRADTQQ VNNLNAWLTT
VVARVCLDTL RSRKARREEA LDTEVTEPVA STQKRNNPEQ EAMLADSVGI ALLVVLDRLS
PAERLAFVLH DLFGQSFEEV AAVLDKTPAA VRQLASRARR RVQGPPAIER NVLNAHRRVV
DAFLTALRAR DFEGLVSVLD PNVVVRIDKF SATGGKDIEI RGAETWARGA IQFAEGARLA
RTVLVDGEVG VVMAPRGKLF RAVRLSISDE GRIREVEIIG EKERLAVMDV QLLPE
|
|---|
| |