| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3448 |
|---|
| Symbol | |
|---|
| ID | 4070332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 4068106 |
|---|
| End bp | 4068660 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637985470 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_592523 |
|---|
| Protein GI | 94970475 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.35999 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGC AGGACCGGCA GATCACCGAA GTGGTGAAGG AGCAAGGCGG CCGGCTGCGC
AATTTCATTC GTCGTCGCGT CGCCGATCCT GAAGACGCCG AGGATGTTCT GCAGGACGTC
TTCTCGCGAC TGGTGGAAGC CAATCGCCTG CTGATGCCGA TTGAACACGT CACTGGGTGG
CTGTACACCG TGGCACGCAA CCGGATCACC GATCTGTTTC GCAAGAAGCA GCCGGAGAAC
TTCAGCGACC TGGACGACGA GGATGACGAC GGCGAGGCGC TGCACTTCGA AGACCTGCTG
CCGTCGCCCG ACGCGGGGCC CGAAGCGGAG TACCTGCGCC GCGTGCTCAT CGATGAGTTG
GGCGCTGCGA TCGAAGAGCT TCCGCAAGAA CAGCGCGAAG TTTTCGTCGC GCACGAGTTG
GAAGGCAAGA GTTTCAAAGA GATTTCAGAG GCGACTGGCG TGAACGTGAA CACGCTGCTC
GCCCGCAAGC GATATGCAGT CCTACGCTTG CGCGAACGGT TGCAGGACAT TCACGACGAA
TTGTCGAGTA CATGA
|
|---|
| Protein sequence | MSEQDRQITE VVKEQGGRLR NFIRRRVADP EDAEDVLQDV FSRLVEANRL LMPIEHVTGW
LYTVARNRIT DLFRKKQPEN FSDLDDEDDD GEALHFEDLL PSPDAGPEAE YLRRVLIDEL
GAAIEELPQE QREVFVAHEL EGKSFKEISE ATGVNVNTLL ARKRYAVLRL RERLQDIHDE
LSST
|
|---|
| |