| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3323 |
|---|
| Symbol | |
|---|
| ID | 4070285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 3939379 |
|---|
| End bp | 3940758 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637985345 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_592398 |
|---|
| Protein GI | 94970350 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.665109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA AAATCATAAT TGGTGGACTT GTTTTGCTCG TTGTCGTGGT CCTGGTGGCG
GTCACGATCA TCAAGAGCAA GCAAGGCGAT ATCACAGTCC AGACTGGAAA AGTTGTTAAG
AGCAACATTG CTTCAGTCGT CACTGCCTCT GGCGAAATCA AGCCCAAGAC GTTCGTCAAC
GTCGGCGCCA ACGCCATGGG ACGCCTCGTC TCGTTGCCCG TGAAAGAAGG CGAGCGCGTT
AAAAAGGGTC AACTCCTTGC ACAGCTCGAG AACATTCAGC CGGAAGCGGA CATGAACGCA
ACCCGCGCTG GACTCGATGT CGCCCAGGCC GATGCCGCAG CCGCCGAAGC CGCGATTAAG
ACCGCGCAGG CTGCCCTCAC CCTCGCCCAG GCCGACTACG AGCAGAAGAA CCTCGATTGG
CAGCGTGGAC AGGGCCTCTA CAAAGACCAG CTGATCCCGA AGCAGGATTA CGACAGCCGC
AAGAATGCTT TCGAAGCCTC TGCTTCCAAC CTCGAGCAGG CCAAGATCCG CATTCAGCAG
AGCAAAGCCC AGGCGGAATC TTCGCAGCGC CGCATCAAGC AGAACCAGGC GCAGCTCACC
CACGCTTCCG ACGTTCTCGC CAAGACGACT TACGTCGCCC CGTACGACGG CATCGTCACC
AACCTGCCGG TCCGTCAGGG TGAAATGGTG GTCATGGGCA TTCAGAACGC TCCCGGCTCC
ACCATCATGA CCATCTCCGA TATGTCGGTC GTCACCGCTG AAGTCAAGGT GGATGAAACC
GACATCGTCA ACGTGAAGCT CGGCCAGGAC GCCGAAGTCA CCATCGACGC GCTCCCGAAA
CAGAAGTTCA AGGGCAAGGT CACCGAGATC GGCGACAACG CCATCCTGCG TTCCACCGGC
GTTTCCACTT CGCAGTCCAC TGGCGGCAGC CAGGAAGCGC GCGACTTTAA AGTCGTCGTG
ACCCTCGACA ATCCCCCGGA CACGCTGCGC CCGGGCCTTT CCGCCACCGC AAAGATCACC
ACCGCGACGC GCGAAAACGC AACGACCATC CCGATCCAGG CCCTGACCAT CCGCCAGCGT
GGCGATTTGA AGGAAAAAGG CAAGAAGGGC GGCAGCGTCC AGGCTGCATC TCCGGACCAG
GCCAAGAGCG ATAAGGAAGA GCTCCAGGGC GTGTTCGTCT ATCGTGCGAA CGAAAACAAG
GTCGAATTCG TACAAGTAGA AACGGGCATC ACCGGGACCA CGGATATTGA GGTCACAAAG
GGGCTCAAAG AAGGCGACCA GATCGTAACG GGTAGTTACA AGGTTCTGCG GACGCTACGC
AACGGAGCCA AGGTCAAAGT GGATAACTCC GCCCCGGCCA AGGTCGAAGA GAACTCCTAG
|
|---|
| Protein sequence | MKKKIIIGGL VLLVVVVLVA VTIIKSKQGD ITVQTGKVVK SNIASVVTAS GEIKPKTFVN
VGANAMGRLV SLPVKEGERV KKGQLLAQLE NIQPEADMNA TRAGLDVAQA DAAAAEAAIK
TAQAALTLAQ ADYEQKNLDW QRGQGLYKDQ LIPKQDYDSR KNAFEASASN LEQAKIRIQQ
SKAQAESSQR RIKQNQAQLT HASDVLAKTT YVAPYDGIVT NLPVRQGEMV VMGIQNAPGS
TIMTISDMSV VTAEVKVDET DIVNVKLGQD AEVTIDALPK QKFKGKVTEI GDNAILRSTG
VSTSQSTGGS QEARDFKVVV TLDNPPDTLR PGLSATAKIT TATRENATTI PIQALTIRQR
GDLKEKGKKG GSVQAASPDQ AKSDKEELQG VFVYRANENK VEFVQVETGI TGTTDIEVTK
GLKEGDQIVT GSYKVLRTLR NGAKVKVDNS APAKVEENS
|
|---|
| |