Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_3041 |
Symbol | |
ID | 4071948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | - |
Start bp | 3610157 |
End bp | 3612691 |
Gene Length | 2535 bp |
Protein Length | 844 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637985060 |
Product | ABC efflux pump, inner membrane subunit |
Protein accession | YP_592116 |
Protein GI | 94970068 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0235871 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATGATG TACGCCTCGC TTTTCGTCAG TTCCTGAAGT CGCCGGGATT TGTGTTCACC GTAGTGCTGA CGATCGCGCT GGGAATTGGC GCCAACACGG CGATCTTCAC TCTGGTTCAT GCGGTGCTGT TGAAGTCTCT GCCCGTGGTG GATCCCAATA CTCTGTATCG AATTGGCGAC AAGGACGACT GCTGCGTGAA TGGCGGCTTC ATGGGCGACG ATGGCGACTT CGACTTGTTC TCATACGACC TCTACACGAG CCTCCGCGAT AACACGCCGG AGTTCGAGCA ACTGGCGGCC ATGCAATCGG GCGGGAACGA GATGTCGGTC CGGCGGGGAT CAGCGCTAGG TAAGGCGCTG CGCACCGAGT ACGTGTCGGG AAATTACTTC ACCACGTTCG GAATTGTTCC TTACACCGGT CGGCTCATGA CGATGAGTGA TGACGTTACC GGCGCCGCGC CGGCGGTGGT GATGAGCTAC ACGACGTGGC AGAACGATTA TGCTGGCGAT CCTTCGCTGG TTGGTTCCAC GTTGTATCTG CAAGGCAAGC CGGTGACGGT GATTGGCATT GCGCCGCCGG GATTCTATGG GGACCGCCTG CGCAGCAGTC CGCCGGCACT GTGGATTCCG CTGGCAATCG AGCCGGTGCT GGAAGGGAAC ACTTCGATCC TTCACGTGAG AGAGAGCAAT TGGCTCTATG CAATTGGACG CCTCAAGCCC GGGGTGCAGA TAGGACCGCT GCAAGCGAAG GTGTCGAACA CTCTGCGGGT GTGGCTGTCG GGCGTGGAGA TGTACACCCG CAACGGTGGG AAAGAGGTGA TCCCGAAGCA GCACGTGGTG ATCGTGCCGG CGGGGGGCGG GATCCAGAAC ATGCAGCAGG AGACCGGGAA GGGCCTGTAT CTGCTCATGG CGATCTCTGC GCTGGTGTTA TTGGTGGCGT GCGCGAACGT GGCGAACTTG CTGCTGGCGC GCGGCGCGAC ACGGCGAACG GAAATTTCCA TTCGCATGGC GATGGGCGCG GCGCGGAAGA GGTTAATTCG CTCGATGCTT GTGGAGAGCG TTCTGCTCGC GTTCATGGCG GGGCTGGTTG GACTTGTGGT GGCTTACGCG GGAACGCGGA CGATTCTCTC GCTGGCATTC CCGGATTCGC CGCAGTTGCC TATCCATGCG ACGCCATCGT TACCGGTGTT GGGATTTGCA CTGCTGTTGT CGCTGGGCAC AGGGGTGATC TTCGGCATCG TGCCGGCGTG GATTACGTCA CATTCCGATC CGGCAGATGC GCTGCGCGGA ACCAGCCGCA CGACCAAAGA CGGAGCATCG ATGCCGCAGA AGTGGTTGAT CGTGTTCCAG GCGGCGCTCT CGTTGGCGCT GCTGGTAAGT GCGGGACTGA TGACGAAGAG CCTGCGCAAC TTGCAGCACC AGGACTTCGG CTTAAAGACC GACAACCGCT ACGTGGTGCA CTTTGACCTT ATGGGCGCCG GATACACGCC CACCACTTTG CAGCCGCTGT ATCAGCGATT GGAAGAGCGG TTCGGTTCGA TTCCGGGAGT GGACGGTGTA GGTATCGCGC TCTACAGCAC GCTCGAGGGA AACAACTGGG GCGAGGGCAT TCGTATAGAA GGGCGTCCGG AGCCGGGGCC GCAGGAGGAT AACGGGTCGT CGTGGGACCG TGTGAATCCG CAATTCTTCA AGATGATGGG TCAGCCGATT CTGCGCGGGC GCGGGTTACA GGAGTCGGAC ACGCCGACAT CGCAGTTCGT GGCGGTGGTC AACGAGGCGT TTGTGAAGAA GTTCTTCCCG AAGGAAGAGC CGATCGGCAA GCACTTCGGA GTTTTCGATA TGAAGTATTC CGGTGCGTTC GAGATCGTGG GAGTGGTGAA GGACGCCAAG TATCAGGACC CGCACCAGAA GATGCGAGCG ATGTATTTCC GTCCGCTGAC GCAGGAATTG AAAGTGGAAG AACCGAACGC CAAAATGGCG GAGGGACGAT CGCTCTACGC CAACTCGATC ACGCTGCACT TTTCGCAGCC GCCATCGAAC GTGGATGAAC TGGTCCGGAG GACGCTGGCG GACATTGATC CCAACATCAC GATCAACAGC CTGCATTCGC TGGAATTCCA GATTGGCGAC AACCTCACAC AGGAACGTTT GATTTCACGG CTGACGATGT TGTTTGGCGC ACTCGCGCTG ATACTCGCGT CGGTGGGACT GTACGGAATT ACGTCGTATG CGGTGGCCCG CCGGACGGGG GAGATTGGAT TGCGGATGGC CCTTGGTGCG GACCGCGGCA ACGTGGTGCG GCTGGTATTG CGTGGGGTAG CCGTTCGAGT GGGATTGGGG CTGGCGATTG GGATCCCGCT CACGCTGATC GGGGGGCATT ACATGGCGGA CCAGCTCTAC AACGTGAAGG CGTGGGACCC GGCGAGTCTG GCGATCGGGA TCGCGGTGCT GTCGGCTGCG GCGCTGGTGG CAGGATTTAT TCCGGCGCGG AGGGCGGCAA GTATTGAGCC AATGCAGGCT TTAAGGATTG AGTGA
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Protein sequence | MHDVRLAFRQ FLKSPGFVFT VVLTIALGIG ANTAIFTLVH AVLLKSLPVV DPNTLYRIGD KDDCCVNGGF MGDDGDFDLF SYDLYTSLRD NTPEFEQLAA MQSGGNEMSV RRGSALGKAL RTEYVSGNYF TTFGIVPYTG RLMTMSDDVT GAAPAVVMSY TTWQNDYAGD PSLVGSTLYL QGKPVTVIGI APPGFYGDRL RSSPPALWIP LAIEPVLEGN TSILHVRESN WLYAIGRLKP GVQIGPLQAK VSNTLRVWLS GVEMYTRNGG KEVIPKQHVV IVPAGGGIQN MQQETGKGLY LLMAISALVL LVACANVANL LLARGATRRT EISIRMAMGA ARKRLIRSML VESVLLAFMA GLVGLVVAYA GTRTILSLAF PDSPQLPIHA TPSLPVLGFA LLLSLGTGVI FGIVPAWITS HSDPADALRG TSRTTKDGAS MPQKWLIVFQ AALSLALLVS AGLMTKSLRN LQHQDFGLKT DNRYVVHFDL MGAGYTPTTL QPLYQRLEER FGSIPGVDGV GIALYSTLEG NNWGEGIRIE GRPEPGPQED NGSSWDRVNP QFFKMMGQPI LRGRGLQESD TPTSQFVAVV NEAFVKKFFP KEEPIGKHFG VFDMKYSGAF EIVGVVKDAK YQDPHQKMRA MYFRPLTQEL KVEEPNAKMA EGRSLYANSI TLHFSQPPSN VDELVRRTLA DIDPNITINS LHSLEFQIGD NLTQERLISR LTMLFGALAL ILASVGLYGI TSYAVARRTG EIGLRMALGA DRGNVVRLVL RGVAVRVGLG LAIGIPLTLI GGHYMADQLY NVKAWDPASL AIGIAVLSAA ALVAGFIPAR RAASIEPMQA LRIE
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