| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_2069 |
|---|
| Symbol | |
|---|
| ID | 4069919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 2479770 |
|---|
| End bp | 2480849 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637984083 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_591144 |
|---|
| Protein GI | 94969096 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.244007 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000737798 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAGAA GAAAAACGCC TGACCGCGAC GGCGTGTACC AGCGCAAGGA CCGTCCGGGC
CAGTTTTGGG CAAGCTGGAC TGATCAAAAT GGCAAGCGCC GGCAGCGGCG ACTACGCGGC
GTCTTCACTC TGACGCAGGC GAAAGAGTTG CTCGCTGCTG CGCAGCTGCG GGTGGAGCGG
ATCAAGGTGC TTGGCTTCGC GGAACCCACA AAGGAACGTT TCGAAAAAAT CGAAGCTCGC
TTTCTGCTGC ACCAACGCGC GCGCCTGACG AAAGCAGGCT ACGAACGTGA GCGTGGCGTC
GTCGAAACAC ATCTGCACGA TTACTTCGGG CAGATGCAAC TGGCCCTTAT CCGACGTGGC
GACATCGCAA ATTTCGTCAC GAAGCGGGCG GCCGAAGTCT CGCCGGCTAC GGTCGCGAAA
GAGCTTGTGA CGCTCAAGCA TCTCTTCCGT CTTTGCGTCG AATGGGAGTT GCTGGTGCTA
AATCCCGCAA CCGGTGTCAA GGCCCCGAAG GTTGCGCCTG GCCGTGTGCG CTGGCTGCAA
CCCGAAGAGC TGCGCGCCCT GTTGCAAGCC TGCCCTGATT GGTTGCGCCC GATCGCAGGT
CTCGCCGCGG CTACAGGGAT GCGGCGAAGC GAGGTGCTCG GCGTGCGATG GTTCGACGTG
GACCGCAGGA ACGGGTGTCT CACGCTGCGT CAAACCAAGA ACAACGAAAG CCGCATCGTG
TTTCTCAATC AATCTGCGCT GCACGTCATC GACTCGCTTC GAAAGGGGAA GTCAAGCGAG
AAGCTCTTCC CGAAGGTCAC GCCGGAACAA GTGAGCATGG GATTCCTTCG GACCTGCCGT
GAGCTTGGTA TCGAGGATTT TCGATGGCAC GATTTGCGGC ACTGCTTCGC CTCACTACTG
CGTCAGTCGG GCGCCGACTT GCAGGATGTA GCCGAGTTGC TTGGTCATAA GGATCTCCGA
ATGACGAAGC GATACTCCCA TCTCTCGCCA GCCCACCTAT CAGCGGCGGC CAGGCGATTC
GATGCCGTGC TCGGGGAGCC CTTGTCGCTT GCTGACCCGA GCGGAGGGCG GGGAGCATAG
|
|---|
| Protein sequence | MPRRKTPDRD GVYQRKDRPG QFWASWTDQN GKRRQRRLRG VFTLTQAKEL LAAAQLRVER
IKVLGFAEPT KERFEKIEAR FLLHQRARLT KAGYERERGV VETHLHDYFG QMQLALIRRG
DIANFVTKRA AEVSPATVAK ELVTLKHLFR LCVEWELLVL NPATGVKAPK VAPGRVRWLQ
PEELRALLQA CPDWLRPIAG LAAATGMRRS EVLGVRWFDV DRRNGCLTLR QTKNNESRIV
FLNQSALHVI DSLRKGKSSE KLFPKVTPEQ VSMGFLRTCR ELGIEDFRWH DLRHCFASLL
RQSGADLQDV AELLGHKDLR MTKRYSHLSP AHLSAAARRF DAVLGEPLSL ADPSGGRGA
|
|---|
| |