Gene Acid345_1912 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcid345_1912 
Symbol 
ID4069390 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Koribacter versatilis Ellin345 
KingdomBacteria 
Replicon accessionNC_008009 
Strand
Start bp2298014 
End bp2298499 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content60% 
IMG OID637983923 
ProducttRNA/rRNA methyltransferase (SpoU) 
Protein accessionYP_590987 
Protein GI94968939 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0566] rRNA methylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.518038 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.581509 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGACC CCAGCCGTCT CCCCGTTGCC GTGCTTCTCG ACAACGTGCG CAGCATGTAC 
AACGTTGGCG CATTTTTTCG CGCCGCCGAC GGCGTCAACC TGCAAAAGCT CTGTCTCTGT
GGAATCACAG CGCATCCGCC GAAAAAAGCG ATCTCAAAAA CCGCTCTGGG CGCGGAAGAA
ACTGTCCCGT GGGAGCACGG TTGGGACGCT GTTGAAATGG CAAAGCATCT TCGCGCGGAA
GGATTTCAGC TCGCCGCCAT CGAAACCAAT CCCGAAGCGA CTGATCTCTT CGACTGGCAG
CCGCGCTTCC CTGTTTGTGT TGTCTTCGGT CACGAAGTCG GCGGTCTTCT GCCCGAACTT
CTCGCCCTCG CCGACGTGCA CATGCGCATC CCCATGCGCG GCGAGAAGAC TTCGCTCAAC
GTCGCTACCG CCGGCGGCGT CGTGCTCTAC GAACTCCTCC GGAAATACCA GGCGCTCCAA
CCCTAA
 
Protein sequence
MSDPSRLPVA VLLDNVRSMY NVGAFFRAAD GVNLQKLCLC GITAHPPKKA ISKTALGAEE 
TVPWEHGWDA VEMAKHLRAE GFQLAAIETN PEATDLFDWQ PRFPVCVVFG HEVGGLLPEL
LALADVHMRI PMRGEKTSLN VATAGGVVLY ELLRKYQALQ P