Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_1618 |
Symbol | |
ID | 4072544 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | - |
Start bp | 1961892 |
End bp | 1963076 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637983627 |
Product | ABC efflux pump, inner membrane subunit |
Protein accession | YP_590694 |
Protein GI | 94968646 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.656867 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCCATTC CGATCTCGTA CAACATTCGC AGTCTCGGAG TTCGCTGGTC CTCCACGCTC GTAGCCGTCA TCGGCATCGC CGGCACGGTT GGAGTATTCG TAGCCATGCT GGCGCTGGCC AACGGCTTCA AGTCGACGCT GGTGCATAGC GGCCTGAATG ACAACGCCAT CGTTCTGCGC GGCGGAGCGA CCTCGGAGAT GATGAGCGGC ATGGGGCTTG ACCAGGTCAA GGTCATCGCC GACATGCCGG GCGTGGCGCG CAAGAACGGC CGATCGAGCA TCAGCCCGGA GGTCGTCGTC ATCGCGGCCT TCCCGCTGAA GAGCACAGGC ACTGATGCCA ACGTCCAGGT GCGCGGCGTG TCGCCGCAGA TCTTCGACGT GCGGCCAAAC GTTCACATCG CGCAAGGTCG CACCTTCGAA CCTGGGCGCA ATGAACTCAT CGTGGGACGC AACGTGCAGA AGACCTATGT CGCTGCGGCG GGTGTTCCCT TTAATCTTGG CCAGACCGTT CGCTTCGGCG GTGGTGAATG GACCGTGGTT GGCGTATTCG ACGCCGGCGG TTCAGCGTTC GACTCGGAGA TCTGGTGCGA CAGTGCCATC CTCGACCAGG TCTACAAGCG TCCGCAGAAC AGCTTCCAAT CTCTGACCGT CCATCTCGAA AACGAAGCGG CTTTCCAGAA GTTCAAGGAT GCGGTAACGA CCGATCCACG TCTGACGATG CAAGTGCAGC GCGAGCGCGA GTATTACGAG AAGCAGTCGC GCGTGATGTC TACGCTGATC ACTGTGCTCG GTGGCCTCGT CGCCGTTGTT ATGGCAGTCG GCGCGATTCT CGGCGCACTC AACACCATGT ACTCCGCGGT GAGTGAGCGT GGTCGCGAAA TCGCGACGAT GCGTGCGCTT GGCTTCGGTG CGGGCAGCGT GGTGCTGTCG TTCATGATCG AAGCGATATG TATCGCGATC ATCGGTGGCG TCGTCGGATG TCTTGCCGTG CTGCCGATCA ACGGACTCAC GACAGGAACG ATGAATTTCC AAACTTTTTC GCATTTGGCG TTTGCGTTCC AGGTCACACC CCCATTGATT ATTGGTGGCC TGATCTTCTC CGTGTTCATG GGGATTCTGG GTGGCGTTCC GCCGGCGGTG CGTGCGGCGC GGGCGCGGAT TGCAGTTGCC CTGCGAGAAC TCTGA
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Protein sequence | MAIPISYNIR SLGVRWSSTL VAVIGIAGTV GVFVAMLALA NGFKSTLVHS GLNDNAIVLR GGATSEMMSG MGLDQVKVIA DMPGVARKNG RSSISPEVVV IAAFPLKSTG TDANVQVRGV SPQIFDVRPN VHIAQGRTFE PGRNELIVGR NVQKTYVAAA GVPFNLGQTV RFGGGEWTVV GVFDAGGSAF DSEIWCDSAI LDQVYKRPQN SFQSLTVHLE NEAAFQKFKD AVTTDPRLTM QVQREREYYE KQSRVMSTLI TVLGGLVAVV MAVGAILGAL NTMYSAVSER GREIATMRAL GFGAGSVVLS FMIEAICIAI IGGVVGCLAV LPINGLTTGT MNFQTFSHLA FAFQVTPPLI IGGLIFSVFM GILGGVPPAV RAARARIAVA LREL
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