| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1602 |
|---|
| Symbol | |
|---|
| ID | 4068903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 1946206 |
|---|
| End bp | 1946769 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637983611 |
|---|
| Product | pilin, type IV, putative |
|---|
| Protein accession | YP_590678 |
|---|
| Protein GI | 94968630 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.980065 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGAATG CGATACACTC GATTCACTCG AATCGGTTCG TCCCGCTCCC TCCTAGAATC
TGTATGGAGG ACCACGCTTT GAGCAAGCAA AAGGGTTTCT CGCTCATCGA ACTTCTGATC
GTCGTTGCGA TCATCCTGAT CATCGCAGCG ATTGCGATCC CGAATTTATT GCGCTCCCGC
ATGGCGGCCA ATGAGGCCTC TGCCGTGAGT TCGGTTCGGT CAATCAATAC CGCGCAGATC
GCTTACAACG CCACGTATCC GACCGCCGGC TACGCCACGA CGATGGCCGC TCTCGGGCCA
GGTGCCACGG ATTGTTCGTC GCCTGGTGCG GCGACTTCAG CAAACTCGTG TCTGTTAGAT
AATGTGCTGT CGTCCGGGAA GAAAGCTGGA TATTCGTTCG TGATCTCGGC ATCGGCGAGC
ACGCCGAACA CGGACTACGC CGTCAACGCG AACCCGGTGA ACCCCGGCAG CAGCGGACAA
CGCTACTTCT ATTCCAATGC CGGTGGCGTG ATTCGGTACA ACCAGTCCGC ACCCGCAACT
TCCAACGATA TTCCAATCCA ATAG
|
|---|
| Protein sequence | MRNAIHSIHS NRFVPLPPRI CMEDHALSKQ KGFSLIELLI VVAIILIIAA IAIPNLLRSR
MAANEASAVS SVRSINTAQI AYNATYPTAG YATTMAALGP GATDCSSPGA ATSANSCLLD
NVLSSGKKAG YSFVISASAS TPNTDYAVNA NPVNPGSSGQ RYFYSNAGGV IRYNQSAPAT
SNDIPIQ
|
|---|
| |