| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1566 |
|---|
| Symbol | |
|---|
| ID | 4068675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 1913513 |
|---|
| End bp | 1915729 |
|---|
| Gene Length | 2217 bp |
|---|
| Protein Length | 738 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637983575 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_590642 |
|---|
| Protein GI | 94968594 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.411848 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00925631 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCCCACTC GTTCGGCCCT GATCGTAGCT CTGCTCGCCC TCAGCCTTTC TCTCGGCTGC
ACCGCTAACA AGCAATTCCA GCGCGCCTCT GCACTTCAAA AAGCGGGCAA GACGCAGGAA
GCCCTCGATA TCTACGAGAA CCTCGTAGTC CGGACGCGCA GCCATAAGGC GCAATCGCAA
TTGTTCGTCC GAATCGGCGA GTGCGAATGG ACGCTTGAGC AGCAGGGTCC ATCCCTCAAT
GCTTTCTTAA AGGCCGCGGA ACTCGATCCC GCAAACAGTT CTGCGCATCT CCATCTCGCA
CAACTCTTCC TCGCCGCTGG GGCTCCTGAC AAAGCGCTCA TCTTCGCCCA AATCGTCCTG
TCGCATAATC CCAACGATCT TGATGCCATG GCTGCTGAAG CCAGTGCCTA CGCCTTCCAG
GGCAACATCC CCGCCGCGAC GAAACGCTTT CAGGATGTTC TCGACCGTGA TCCCGCCCGA
GAAGATGCTG CGGTAACGCT CTCGCAGATT TATTCCGCCA GTGGCCGCAT CGATCAAGCA
CGCCACGTGC TCGAAACTGC CGCTGCGAAG GCCCCCAAAA GTTCCGTCAT CCAACTCGCA
CTCGCGCACT TCGAAGAAGA GCAGGGTCGA CTCCCTGCCG CCGAAGCCGC CTATCGCAAA
GCCGTGACGC TTCAGGATGA CGGCCCCACG AATCTTAAGC TTGCCCAATT CCTCGAACGC
AGCGCCCGTG TCCCGGAAGC CGAAACCGTG CTTCGTCGAG TGGATGGGCT CACTCCCGCG
AAGCCCTATG CCCTCGCCGA TTTCCAGTTG ATTTCAGGAC GCGACGGTGC CGCTTCGCAG
CAGTACTTAA AGCTTCTCCT GAATCGGGAT AACAAGCGCG ACGGGAACAC CGCCACTCCG
ATCGCCGCCC GCGCGATCGA AGCCAAACTC GCCGTTGCCA ACGGTCAGAG TGGCAGCAAG
CGCACCCAGT CGCTTCTGGA AGCCAAGAGT GCCCTCGGCA TCCATCGCGC AGAATTTGGC
GAAGAAACCA CGGCAGTCCT GGCTGCTGAA ATCGCTCTGG CTGAGGGTGA TTCAGCCACC
GCAGCCGCCC TTGCGCGATC GGTGGTTGAC GAGCACGCCG ACAACAACTC CGCCCACTAC
GTTCTCGGTC TCGCACTCTC CCGTATGGGA AAGAACGCAG AAGCCCGCGC CGAGTGGCAA
ACCATCCTCG ACAATGACAC GACCTCAGTG CCGGCCCGGC TCTCTCTCGC ACAGCTTTCG
CTCTCGGAAG GCAATATCGC CGATGCCGAG CAGATGGTTG TTCCCGTCGT TCGTCAGGAA
CCGGCAAACC TCGGTGCTCT GGAATTGTTC GGCCGAGTGT TGATCGCCGA GAAAGATTTC
GGTGCCGCGA ACAGCATTGC CGTGCGTTAT CAGCAAATCG ACAAGACAAG TCCTGTAGCG
CACCTTCTTA AAGGCGACGC CGCTCTCGCC CAGCACCACC TCGCCTATGC GCTGATTGAA
TATGAGCAAG CTGTTCTGCT CGATCCGAAC TCAACCGCCG CTCAGGAAGG GCTCGTTCGC
GTCTATCGCT CCGGAACCAT CACCAAGCCA ATGCTGCAGC GCATGGAGAT GAGCGCAGCC
GCCCCTCCGA AATCCGCATC ACTCATGGAA CTCGCCGGTC GGCTCTACTC AGAACATCAT
TGGAACGATG ACGCTGCCCG CTGTTTCCGC GCCGCTTTAG CTATGGAGCC CCAACGCAGC
AGCTCCGCCG TGGAACTCGC CAAGCTCCAG GCGCAGGATG GTAGTTCGAC GGATGCAGCG
AGCGCCGCCG CGGCCATCAG CGCATCGAAT TCACTGCTCA TTCGCGGACT CGGTGCCCAG
GATCGCAGCG ACCTGAATGC AGCTATTCGC AACTACGAAG CCGCCCTGAG CAAAGGCGAG
AATACCGGTG TCGCCGCCAA CAACCTCGCG TGGCTTTATG CCGAGCAAGG CAGCAATCTC
GACCGCGCCC TGGAACTCGC CCAGCGTGCG CGCGAGGCAA ATCCCGTGGA TCCGGCAGTC
ACCGACACTC TCGGTTTCGT GCTGCTGAAA CGCCGCGAGT ACTCCATGGC CCTGATGGCC
TTGAAAGAAG CAGATCAGTT GATGCGCGTC CAAAAGAACT CCGACGTCCA ACTCGCGCAA
GCAATCCGGC AGCACATCCT GGAAGCATCG CGCCAGTCGG GAGCAACCAC ACCCTGA
|
|---|
| Protein sequence | MPTRSALIVA LLALSLSLGC TANKQFQRAS ALQKAGKTQE ALDIYENLVV RTRSHKAQSQ
LFVRIGECEW TLEQQGPSLN AFLKAAELDP ANSSAHLHLA QLFLAAGAPD KALIFAQIVL
SHNPNDLDAM AAEASAYAFQ GNIPAATKRF QDVLDRDPAR EDAAVTLSQI YSASGRIDQA
RHVLETAAAK APKSSVIQLA LAHFEEEQGR LPAAEAAYRK AVTLQDDGPT NLKLAQFLER
SARVPEAETV LRRVDGLTPA KPYALADFQL ISGRDGAASQ QYLKLLLNRD NKRDGNTATP
IAARAIEAKL AVANGQSGSK RTQSLLEAKS ALGIHRAEFG EETTAVLAAE IALAEGDSAT
AAALARSVVD EHADNNSAHY VLGLALSRMG KNAEARAEWQ TILDNDTTSV PARLSLAQLS
LSEGNIADAE QMVVPVVRQE PANLGALELF GRVLIAEKDF GAANSIAVRY QQIDKTSPVA
HLLKGDAALA QHHLAYALIE YEQAVLLDPN STAAQEGLVR VYRSGTITKP MLQRMEMSAA
APPKSASLME LAGRLYSEHH WNDDAARCFR AALAMEPQRS SSAVELAKLQ AQDGSSTDAA
SAAAAISASN SLLIRGLGAQ DRSDLNAAIR NYEAALSKGE NTGVAANNLA WLYAEQGSNL
DRALELAQRA REANPVDPAV TDTLGFVLLK RREYSMALMA LKEADQLMRV QKNSDVQLAQ
AIRQHILEAS RQSGATTP
|
|---|
| |