| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1560 |
|---|
| Symbol | |
|---|
| ID | 4068669 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 1908820 |
|---|
| End bp | 1909404 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637983569 |
|---|
| Product | ATP-dependent Clp protease proteolytic subunit ClpP |
|---|
| Protein accession | YP_590636 |
|---|
| Protein GI | 94968588 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.173495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00284408 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGTGC CCATGGTGAT CGAACAAACC AGCAGGGGCG AGCGCGCGTA CGATATTTAT
TCCCGCCTGC TGCGGGACAA CATCATCTTC CTCGGCACTC CGATTGACGA CAACGTCGCC
AACCTGATCA TCGCCCAGAT GCTGTTCCTT GAGGCCGAAG ATCCCGAGAA GGACATTTCG
CTCTACATCA ATTCTCCGGG CGGCTCCATC ACCGCCGGCA TGGCCATCTA CGACACCATG
CAATTCATTC GCCCGGATGT CGCCACCATC TGTATCGGCC AATGCGCCAG CATGGGGGCC
ACGCTGCTGG CCTCCGGAGC TCCCGGCAAA CGCTATGCCC TGCCCACCTC GCGCATCTTG
ATCCACCAAC CGCTCATGAG CGGACTCAGC GGCCAGGCCA CGGACATCGA CATCCACGCC
CGCGAGATCC TGCGCATGCG CGAGATCACC AACCAACTCC TCGCGAAGCA TTGCAACCAG
CGTCTCGAGA AAGTTGAAAA AGACGTAGAA CGCGACTTCA TCATGAACGC CCAGCAAGCC
AAAGAGTACG GCTTGGTGGA CGACATCATT TACAAACACA AGTAG
|
|---|
| Protein sequence | MLVPMVIEQT SRGERAYDIY SRLLRDNIIF LGTPIDDNVA NLIIAQMLFL EAEDPEKDIS
LYINSPGGSI TAGMAIYDTM QFIRPDVATI CIGQCASMGA TLLASGAPGK RYALPTSRIL
IHQPLMSGLS GQATDIDIHA REILRMREIT NQLLAKHCNQ RLEKVEKDVE RDFIMNAQQA
KEYGLVDDII YKHK
|
|---|
| |