Gene Acid345_1541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcid345_1541 
Symbol 
ID4072932 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Koribacter versatilis Ellin345 
KingdomBacteria 
Replicon accessionNC_008009 
Strand
Start bp1883947 
End bp1885011 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content60% 
IMG OID637983550 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_590617 
Protein GI94968569 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.959394 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.682302 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACCT CATCCGTTCC GGAAAACGTC TCAGTCGGGC AGGCGCTGCT CGCGGTGGAC 
TGCGTCGCCA AGCGCTTTGG AAAGAACATC GTTCTTCGAG ACGTTTCCCT TACGGTCGCG
CAAGGTGAGT TCCTCAGCAT CCTCGGCGAG AGCGGTTCCG GCAAAACGAC GCTGCTGCGT
CTCATCGCGG GCTTCGAGCA ACCGGACGGC GGTACCATCA CCATGGCCGG CGAGCGCATC
GAGAACCTCC CGCCTTACAA GCGCCGCGTA AACACGGTCT TCCAAAGCTA CGCGCTCTTC
CCACATCTCA ACGTGGAAGA GAACGTCGCC TACGGATTGA AGGTCAACAA AACTTCCAAA
GGTGAAATCC CCAAGCGTGT GCAGGAAGCG CTCGCCATGG TGAAGATGGA GAGTTTCGCA
AAGTCGAAAC CATCCAAGCT CAGCGGCGGA CAGCAGCAGC GGGTTGCGCT CGCGCGCGCA
TTGGTAAATC GTCCCAAGCT CCTATTGCTC GACGAACCGC TGTCCGCGCT CGATGCCAAC
CTGCGGCGCG AAATGCAATT CGAATTGAAA TCGCTCCAAC GCGAAGTCGG CATCGCCTTC
GTCTTTGTCA CGCACGACCA GGAAGAGGCG ATGACCATGT CCGATCGCGT CGCCCTGCTG
CGTTACGGAG CACTGGAGCA GATTGCCAGT CCGCGGGAAA TCTATGCCAA GCCCGCCACC
GCGTATGTCG CGCAGTTCAT CGGACACAGT AACCTCTTGC GCTGTACAGT GAGCCGCGGC
ATCGCTCGCT GCGGTAACCT GATGTTCACA ACCTCGGCGC CCGACGGCCC CGCGGTCTTC
TCGCTCCGGC CAGAAGCAAT CCGCATCGCC AGCACGGCGA GCGATCAAGT CAGGTTCAAA
GGCACCGTCG CTCGCCAGGT CTTCCAGGGC GCCACTGAGC TGTACGAACT CGACGCCGGC
GGTTTTCGGC TGAATGCGAA GATCTATGGT TCGGGAGTTC CCTCGGGCGA GAGCGAATTC
GAGTGTTCTC CCGCTGACAT CGTTGTCGTG AAGGAGAGCC TCTAG
 
Protein sequence
MTTSSVPENV SVGQALLAVD CVAKRFGKNI VLRDVSLTVA QGEFLSILGE SGSGKTTLLR 
LIAGFEQPDG GTITMAGERI ENLPPYKRRV NTVFQSYALF PHLNVEENVA YGLKVNKTSK
GEIPKRVQEA LAMVKMESFA KSKPSKLSGG QQQRVALARA LVNRPKLLLL DEPLSALDAN
LRREMQFELK SLQREVGIAF VFVTHDQEEA MTMSDRVALL RYGALEQIAS PREIYAKPAT
AYVAQFIGHS NLLRCTVSRG IARCGNLMFT TSAPDGPAVF SLRPEAIRIA STASDQVRFK
GTVARQVFQG ATELYELDAG GFRLNAKIYG SGVPSGESEF ECSPADIVVV KESL