| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1540 |
|---|
| Symbol | |
|---|
| ID | 4072931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 1882877 |
|---|
| End bp | 1883938 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637983549 |
|---|
| Product | ABC spermidine/putrescine transporter, periplasmic ligand binding protein |
|---|
| Protein accession | YP_590616 |
|---|
| Protein GI | 94968568 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.713242 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.652305 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAAC GCTTTGCCCT CGCGCTGCTG GTTGTCTGTA CTTTGTTTCT CGGCTCATGC
TCGAAGAAAG TGCCGACGCT CAACCTTCTC GTATGGGAGG GCTATGCCGA TCCCTCTTTC
GTGAAGGGCT TCGAAGAGAA ATATCACTGC AAGGTCGCAG CAAGCTACAT GGGGTCAAGC
GATGAACTCG TCGCCAAGCT GCGTGGCGGT AGCGCGTCGA ACTACGATGT AATCTCGCCG
TCCAGTGACG TCGCGACTAG TATCGCGAAG AATGGTCTCG CCGCTGAAAT CGACACTACG
CAAATCCCCG ACTACAACAG TCTCTCGCAG CAGCTTCGCG ATCTCCCTCT CGTCAAAGCA
AATGGCAAGA CCTATGGAGT CCCATTCATG TGGGGCCCGA ATCCTCTGCT TTACGACACT
TCTTATTACA AGACGGCGCC GCAAAGCTGG GCTGACTTGT GGGACCCAAA GCTGAAGTCG
AAGATCTCCG TCTGGGATGA TCTCTCCACC GTCTATATGG CGGCACAAGT GCTCGGCTAC
GACAAGCCCG ATCCAGCGCA CCTCTACAAT CTCACCGACG ACGAACTCGA AAAAGTCAAA
GCAAAGCTTC TCGAATTAAA GCCAAACGTT CGCAAGATGT GGTCTACCGG TGGGGAACTG
ACCAACCTTT TCCAGAACCA CGAGGTCGTC GCCGCGATGG GCTGGCCGCT GATGACGAAT
CAACTTCATA AGGCCAACTT TCCAATCGGC GAAACCATTC CGAAGGAAAA CACGACCGGC
TGGATCGACC ATTTGATGAT CACCGCCGCC AGCGACAACA AAGATCTCGC GATGAAATTC
CTGGCATACA TGGTCGAAGC GAAAACGCAG AAGGCCGTTA CCGACGTGAC CGGCTACACA
CCGGCCAATC CCACTGCCGC GCAACTCATG ACCGACCAGG AGAAGAAGAG CCTTCACCTC
GCTGATGTCG AGGGCTACCA GAAGCACATC TATTTCTGGC AGGATGTTCC GCGCCGTGCG
AAGTACAACG AAATCTGGAA CCAGGTGAAA GCCGCGCAAT AG
|
|---|
| Protein sequence | MSKRFALALL VVCTLFLGSC SKKVPTLNLL VWEGYADPSF VKGFEEKYHC KVAASYMGSS
DELVAKLRGG SASNYDVISP SSDVATSIAK NGLAAEIDTT QIPDYNSLSQ QLRDLPLVKA
NGKTYGVPFM WGPNPLLYDT SYYKTAPQSW ADLWDPKLKS KISVWDDLST VYMAAQVLGY
DKPDPAHLYN LTDDELEKVK AKLLELKPNV RKMWSTGGEL TNLFQNHEVV AAMGWPLMTN
QLHKANFPIG ETIPKENTTG WIDHLMITAA SDNKDLAMKF LAYMVEAKTQ KAVTDVTGYT
PANPTAAQLM TDQEKKSLHL ADVEGYQKHI YFWQDVPRRA KYNEIWNQVK AAQ
|
|---|
| |