| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1473 |
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| Symbol | |
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| ID | 4069623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | + |
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| Start bp | 1780498 |
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| End bp | 1782924 |
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| Gene Length | 2427 bp |
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| Protein Length | 808 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637983482 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_590549 |
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| Protein GI | 94968501 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.401194 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.578419 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCTGA AGCAACTACT GGGTGTTTCC GTAACGCTGC TCGCGCTGGC TGGCGCTGCA
GCGGCCGCCG GGTCGCAGTT GACCAACGTA AACGTCGCGT CGGAGGGAAC TTCGACTGTC
GTTACGCTGC ACACGACCGG CGCCTTCACG CATAACGAAT ATCGACCTGC AGACAATTTG
ATGCTGGTCG ATTTGACGGG TGTTTCCGCC GGACAACTCC AGGAGCGCAT GCGCAACCTG
GATGCTGCCA GCGTGAAGTC GTACCGCGTG CTGACTTATA CGGGCACCAG CGGAACGGAA
GTCACCCGGG TTGAATTGGC TCTTGTGCCG GGAGCCGCTG TTGAGGTCGA TAAGAAAGAC
GCCGACCTCA CATTAAAGAT CTCGGGCGGG GAAGTAGCGG CTGCGGCTCC GGTGAGGGCA
CCGGCAGCAG CGCCCGTTGC TCCTGCGCCT GTTGCTACGG CAACCGCAGC TCCCGCAGCG
AACACCACGC CGGTCATGAT CCGGCAGGTG AACGTGACGC GCGGCGCGAA TGGCATGGAA
GTCGCCATCT CGCCACGCAC AGCGGCTGCT CCGATTACGC AGACGCTGTC GGGCCCCGAC
CGTCTCGTGA TCGATCTGCC AAACGCGATC CCGGCCGTAC GCACCAAGCA GATCGCCGTC
AACAGCTCTG ACATTAAGGG CGTCCGCATC TCGCGTTACC AGGAGAATCC TCCGGTTACG
CGCATTGTTG TGGACATGAC CAGCGCGCAT GATTTCCAGC TGGTACCCGG CGAAAAGGAA
CTGGTCGTAA AGCTGACGCC CTCGATGGCG AAGGCTGCTC CAGCTCCAGT GGTCGAGAGC
AAGCCCGCAG CGACGGAAGT CGCAAAGGCT GACGCTCCGG CTGCGATCCC GGCTGCCGCA
CCTGCCGCTA CCGACACCAA GCCCACCGCC ACACCGGCGC CGAGCTTCGT GATGGTTGAC
GCGCAGAACC CGGTCAACGT TCCGAAACCT GCTCCGGCCG TTCGCTCGTT GGAAGCCGCC
TCTGTGATGG CTACGACCAT CGCCAAGGAC AAGGTTGACA ACGTTCTTCC GCCGACAGCA
TCGGAAGCAC CAGCCGGCGC CGTGAACCTG GCGCAGGAAC AACAGACGCA ACAGCACAGC
GCTCAGCCGG CGTCGGGTCC CCGCTACACG GGCGAACCGA TCTCGGTGAA CCTGAAGGAT
GTCGACCTGA AGGACTTCTT CCGCCTGATC CACGAAATCA GCGGCTTGAA CGTCGTTCTC
GACCCCAGCG TCAAAGGCAC CGTAACCCTG GTGCTCGACG ACGTACCGTG GGATCAGGCC
CTCGACATCG TGTTGCGGAA CAACGGCCTT GACCGTCAGC TCGACGGCAA CGTCCTTCGC
ATCGCCTCAA TCGAAACGCT GCGCACGGAA GCCGTTGCCC GCCGCCAGCA GCTCGAAGCG
CAGGCCCTCG CGGTGGACAA GGTCACCGTC ACCCGTTTCC TGAGCTACGC TCGCTCGGCC
GATCTCGTCC CGACACTGAA GAAGTTCCTC AGCGCTCGCG GCGACATCAT TGCCGACGGC
CGTATGAATG CTCTCGTGAT CTCGGATATT CCGGGCGTCA TCCCGAGCTT GGACCGCTTG
ATCTCGCAAC TTGACCGCAA GACGCAGGAA GTTGAAATCG AAGCCCGCGT CGTGGCGGCA
ACCCGCACCT TCGTACGTGA GCTTGGTATT CAGCTCGGCG GCGGCTGGGG CGGCGCCTCC
ACATCGGTCA GCGGCAACCC GAACGCTGGT TTCGGTAGTA CGAACTTCAA GAACCCGGCC
GGACAGCCGA TTACCGGGGC TCCGTTCCCG ATTTCCACGA CCGGCGCTTT CCCGCTCTTC
ACCAACTTCC AGGTGTTGAA CCCGACAGCC GGCCTTGAAC TCATCAACAT CGGCCACTCC
TATGGCCTCG ACCTCTACCT CAGCGCTGCT GAACAACGCG GCCTGTTGAA GATCCTGTCG
AGACCGCGTG TCGTGACCCA GAACAACGTG ACTGCTCTCG TCCGCCAAGG TTTCCGTCTG
CCGGTCGTTA CGCTGTCGCA GTTGAACGGT CCTCCGACCG TCACCTACGT GGACGCTTTC
CTCCGCCTGA CGGTTACGCC CCAGATCACA GTTGAGAACA CCATCTTCCT GGCAGTCGAC
GTGGAAAACA CCACGCCTGA CTTCACCCGG ACGGTACTCG GCAACCCGAT CCTGTTGACG
CAACAGACCA CCACCCAGGT CCTCGTGACC GACGGCGGCA CGGTCACCAT CGGCGGCGTG
GTTCAGACGC AGAACACCTT GACGAGCCAG GAAGTTCCGA TCCTCGGCGA CATCCCGATC
CTCAAGTACT TGTTCATGCA CAAGACCACC AACACCCAGA CCCAGGAACT GATCTTCTTC
ATCACTCCGA AGATCGTTCA AACATAG
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| Protein sequence | MRLKQLLGVS VTLLALAGAA AAAGSQLTNV NVASEGTSTV VTLHTTGAFT HNEYRPADNL
MLVDLTGVSA GQLQERMRNL DAASVKSYRV LTYTGTSGTE VTRVELALVP GAAVEVDKKD
ADLTLKISGG EVAAAAPVRA PAAAPVAPAP VATATAAPAA NTTPVMIRQV NVTRGANGME
VAISPRTAAA PITQTLSGPD RLVIDLPNAI PAVRTKQIAV NSSDIKGVRI SRYQENPPVT
RIVVDMTSAH DFQLVPGEKE LVVKLTPSMA KAAPAPVVES KPAATEVAKA DAPAAIPAAA
PAATDTKPTA TPAPSFVMVD AQNPVNVPKP APAVRSLEAA SVMATTIAKD KVDNVLPPTA
SEAPAGAVNL AQEQQTQQHS AQPASGPRYT GEPISVNLKD VDLKDFFRLI HEISGLNVVL
DPSVKGTVTL VLDDVPWDQA LDIVLRNNGL DRQLDGNVLR IASIETLRTE AVARRQQLEA
QALAVDKVTV TRFLSYARSA DLVPTLKKFL SARGDIIADG RMNALVISDI PGVIPSLDRL
ISQLDRKTQE VEIEARVVAA TRTFVRELGI QLGGGWGGAS TSVSGNPNAG FGSTNFKNPA
GQPITGAPFP ISTTGAFPLF TNFQVLNPTA GLELINIGHS YGLDLYLSAA EQRGLLKILS
RPRVVTQNNV TALVRQGFRL PVVTLSQLNG PPTVTYVDAF LRLTVTPQIT VENTIFLAVD
VENTTPDFTR TVLGNPILLT QQTTTQVLVT DGGTVTIGGV VQTQNTLTSQ EVPILGDIPI
LKYLFMHKTT NTQTQELIFF ITPKIVQT
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