Gene Acid345_1471 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcid345_1471 
Symbol 
ID4069621 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Koribacter versatilis Ellin345 
KingdomBacteria 
Replicon accessionNC_008009 
Strand+ 
Start bp1779075 
End bp1779698 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content55% 
IMG OID637983480 
Producthypothetical protein 
Protein accessionYP_590547 
Protein GI94968499 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3167] Tfp pilus assembly protein PilO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.229275 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.300377 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAGCT TTAGCGATAT GAAGCCAATT GCACAGTGGA CGATCATCAT CGGCCTCGCC 
GTCGTGGTCA CCGCTGGTAT GTACATGTTC GTCTATAAGG GCATGGCGGA AGCCAACCAG 
GCGAACTTGC AGGTGTTGAA AGACAAGCAG GCAGAAATCG ACCAACTCCG TCCTTACGAA 
GCGAAGTTGC CGGAGTTGCT CGCGCAGATC GAATCTCTGA AACAGCAGAT GGAGATTCAG 
AAGAAGATCG TGCCGGACGA GAAGGAAGCG GACAAGTTCA TCCACCTGAT GCAGGACACC 
GCTGCACAGT CTGGCGTTGA AGTCCGCCGC TATACCTCTC AGGCAGCACA GCAGAAAGAG 
TTCTACACCG AAGTCCCCTT CCAGATGGAA GTGGATGGAC CGTACTACTC GATGCTGAAC 
TTCTTTGAGC GCACCGGAAA GCTGGAACGG ATTGTGAATA TGACCGGCTT GACGATGGGT 
GCGATTAGAG GCAAGGGCGC AGCTGCAGGC AAGTATGAAT ACGCTCCCAA CGAGAGCGTG 
GTTGCAGTCG CCACCGCAAG CACTTTCTAT AGCCGCGACG TTGCTCCAAC TCCCGCCCCT 
GCTGCGAAGC CGGCGGCAAA GTAA
 
Protein sequence
MASFSDMKPI AQWTIIIGLA VVVTAGMYMF VYKGMAEANQ ANLQVLKDKQ AEIDQLRPYE 
AKLPELLAQI ESLKQQMEIQ KKIVPDEKEA DKFIHLMQDT AAQSGVEVRR YTSQAAQQKE 
FYTEVPFQME VDGPYYSMLN FFERTGKLER IVNMTGLTMG AIRGKGAAAG KYEYAPNESV 
VAVATASTFY SRDVAPTPAP AAKPAAK