| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1394 |
|---|
| Symbol | |
|---|
| ID | 4068929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 1694409 |
|---|
| End bp | 1695761 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637983403 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_590470 |
|---|
| Protein GI | 94968422 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.205793 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0550645 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAACA TTCTGATCGT TGATGACGAA GCCGCAATCC GCGAGACGCT GAAAGGCGTC
CTTGAGGACG AGGGCTACAG CATTGCTACG GCTGAGACCG CCGAGCAGTG CCTGGACGGC
CTGCGCCGCA AACCCTACGA CGTGGTCCTG CTCGACATCT GGCTGCCCGG CATGGACGGC
CTCGATGCAC TGGAGAAGAT CCAGGAAATC GAGGACCATC CCGAGGTCAT CATGATCTCC
GGCCACGGCA CCATCGAAAC CGCGGTGCGC GCAACGAAAC TCGGTGCGTT CGATTTCCTC
GAGAAGCCGC TCTCGATTGA TAAGACGCTG ATCGTCATCA AGAACGCGCT CGACTCCAAG
CGCATGCGCA GCGAGAACCT CGAACTTAAA CGCCAGCTGC AATCGAAGAG CGTGATCGTC
GGTGATTCGA TCCCGATGAA AGCTTTGCGC CAGCAAATCG GCCTGATGGC CCCGACCAAC
GGACGCGTAC TGATCTACGG CGAGAGTGGC ACGGGCAAAG AGCTGGCGGC GCGCGCCATC
CACGCGCAGA GTTTGCGCAA GGACGCGATG TTCGTCGAAG TCAACTGCGC GGCAATTCCA
GAAGACCTGA TCGAGAGCGA ACTCTTTGGG CACCGCAAGG GATCCTTCGC CGGCGCGACC
ACCGACAAGG AAGGGAAGTT CTTCAAGTCC GACGGCGGCA CGCTCTTTCT CGACGAAGTG
GGCGACATGA GCCTGAAGAC GCAGTCGAAG GTCCTCCGGA CGTTGGACGA AGGCAAGTTC
GAACCCGTCG GCAGCGATGA GCCGGTGCGG GTGGATGCGC GCGTGATCGC CGCTACCAAT
AAAGATCTGG AAGACGAAAT CAACAAGGGC AATTTCCGCG AAGATCTTTT CTATCGACTG
AACGTCATTC CGTTCTACGT GCCCCCGTTG CGCGATCGTA AGGAAGACAT CCCGCTCCTG
GTGCGGCACT TCCTGCGCGA GATTTCGTCG CAGTACAACC GCCGTCCGAA AGAAATTACC
GACGACGCAA TCGATACCCT CATGCGCTAC TCGTGGCCCG GCAATGTGCG CGAGTTGCGC
AACGTGATCG AGCGCGTGGT CATCATGAAT CCCACGGTGA GCAAGCTCGA CCGCAAGCAC
CTGCCGCCGC TCGTCTATCG CGAGGGCTCG CGGCGCGGCT TTGGCGAGTT CAGCACTCTG
CACCAGGCGC GCGCCGCCTA CGAGCGCGAC TACATCCTGA AAAAGCTCGA TGAGAACCAC
GGCAACATCA GCCGCACCGC CGAGGTGCTC GGCCTTGAGC GCAGCCACAT GTATCGCAAG
ATGAAGGCGC TCGGCATCGC GGTGAAGGAA TAG
|
|---|
| Protein sequence | MHNILIVDDE AAIRETLKGV LEDEGYSIAT AETAEQCLDG LRRKPYDVVL LDIWLPGMDG
LDALEKIQEI EDHPEVIMIS GHGTIETAVR ATKLGAFDFL EKPLSIDKTL IVIKNALDSK
RMRSENLELK RQLQSKSVIV GDSIPMKALR QQIGLMAPTN GRVLIYGESG TGKELAARAI
HAQSLRKDAM FVEVNCAAIP EDLIESELFG HRKGSFAGAT TDKEGKFFKS DGGTLFLDEV
GDMSLKTQSK VLRTLDEGKF EPVGSDEPVR VDARVIAATN KDLEDEINKG NFREDLFYRL
NVIPFYVPPL RDRKEDIPLL VRHFLREISS QYNRRPKEIT DDAIDTLMRY SWPGNVRELR
NVIERVVIMN PTVSKLDRKH LPPLVYREGS RRGFGEFSTL HQARAAYERD YILKKLDENH
GNISRTAEVL GLERSHMYRK MKALGIAVKE
|
|---|
| |