| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1392 |
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| Symbol | |
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| ID | 4068927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | - |
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| Start bp | 1689374 |
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| End bp | 1691089 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637983401 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_590468 |
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| Protein GI | 94968420 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E
[TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.025124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCAGA GGTTGGGCGA TCTTCTTGTT CGCGAGAAGG TCATCACCGC CGAGCAGTTG
GAACAAGCAC TCAGGGAACA AGGCTCCAGC GGCACGCGTC TTGGTGCGGC CCTGGTGAAG
CTTGGTTTTC TCTCGGACGA TGACGTCACC AACTTCCTCT CCCGTCAGTA TGGCGTACCC
GCCATCAACC TCAACTATTT CGAGATCGAT CCTTCCGTCG TAAAACTCAT TCCTTACGAC
ACTGCGAAGC GTTACCAGAT CCTTCCCTTG AGCCGCGTCG GCGCCTCGCT GACCATCGCC
ATGGTGGATC CCACCAACGT CTTCGCAATG GACGACATCA AGTTCATGAC CGGCTTCAAC
ATTGAGCCGG TGGTTGCCAG CGAAAGCGCG ATCCTCGAAG GCATCGAGAA GGCCTACAAC
ACCGCTCCGG AAGAAGATCT TGAGTCGGTG ATGGCCTCGA TGGGTGAGGG TGAGGCCTCC
GATATTGAAG TCCAGGCGGA CATGGAAGAG GCTGACTCCG CCGACCTCGA GCGCGCCGCC
GAAGAAGCTC CGATCGTCAA GCTGGTGAAC ATGATCCTCA CGGAAGCCGT GAAGAAGGGC
GCCAGCGACA TCCACATGGA GCCCTACGAA AAGGAATATC GCGTACGCTT CCGGATTGAC
GGCATTCTCC AGACGATGAT GAATCCGCCG ATGAAACTTC GCGACGCGAT CATCTCGCGC
GTGAAGATCA TGGCAAAGCT CGACATCAGC GAAAAGCGCC TGCCGCAAGA CGGCCGCATC
ATGCTGAAGA TGAACCTCCA GGGAAAGAAG AAAGTGCTCG ACTATCGCGT CAGCACCCTG
CCTACCCTGT GGGGCGAAAA AGTCGTTCTC CGACTGCTCG ACAAAGAGAG CCTGCGTCTC
GACATGACCA AGCTCGGCAT GGAGCAGGAA TCGCTCGACA AGTTCACCAA AGCTATCTTC
AAGCCGTACG GGATGGTGCT GGTCACCGGT CCCACGGGAT CCGGTAAGAC GAACACGCTG
TACTCCTCGA TTTCGCAGCT CAACAAGCCC GACACCAACA TCATGACCGC TGAAGATCCG
GTCGAGTTCC AGTTGCACGG TGTGAACCAG GTGCAGATGA AGGAACAGAT CGGCTTGAAC
TTCGCGGCGG CCTTGCGCTC CTTCCTGCGT CAGGACCCCA ACATCATTCT CGTCGGTGAG
ATCCGCGACT TTGAAACCGC GGAAATTGCG ATCAAGGCCG CATTGACCGG CCACTTGGTT
TTGTCGACGC TGCACACCAA CGGCGCGCCC GAAACCATCA GCCGCTTGAT GAACATGGGT
ATCGAACCAT TTCTTGTCGC GACTTCAGTG CACCTGATTG CTGCGCAGCG CTTGATCCGC
CGCATTTGCA GCAACTGCGC CGAAGTCCTC GACCTGCCGC CGCAAGCGTT GATCGAAGCC
GGCTATTCGC CGGCCGAGTC CAAGACGGTG AAGATCAGCA AGGGCCGCGG TTGCAGCAAC
TGCAACAACA CGGGATATAA GGGCCGTACC GGCCTTTATG AAGTAATGGA GATTGACGAC
GAAATCCGGG AATTGATCCT GGTCGGCGCT TCGGCGCTGG AGTTGAAGAA GAAAGCGATC
GAGAAAGGCA TGATCACGCT GCGTCGCAGC GGCTTGATCA AAGTTTCACT GGGGATCACG
ACGTTGGAAG AAGTCGCACG TGAAACCGTG CACTAA
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| Protein sequence | MSQRLGDLLV REKVITAEQL EQALREQGSS GTRLGAALVK LGFLSDDDVT NFLSRQYGVP
AINLNYFEID PSVVKLIPYD TAKRYQILPL SRVGASLTIA MVDPTNVFAM DDIKFMTGFN
IEPVVASESA ILEGIEKAYN TAPEEDLESV MASMGEGEAS DIEVQADMEE ADSADLERAA
EEAPIVKLVN MILTEAVKKG ASDIHMEPYE KEYRVRFRID GILQTMMNPP MKLRDAIISR
VKIMAKLDIS EKRLPQDGRI MLKMNLQGKK KVLDYRVSTL PTLWGEKVVL RLLDKESLRL
DMTKLGMEQE SLDKFTKAIF KPYGMVLVTG PTGSGKTNTL YSSISQLNKP DTNIMTAEDP
VEFQLHGVNQ VQMKEQIGLN FAAALRSFLR QDPNIILVGE IRDFETAEIA IKAALTGHLV
LSTLHTNGAP ETISRLMNMG IEPFLVATSV HLIAAQRLIR RICSNCAEVL DLPPQALIEA
GYSPAESKTV KISKGRGCSN CNNTGYKGRT GLYEVMEIDD EIRELILVGA SALELKKKAI
EKGMITLRRS GLIKVSLGIT TLEEVARETV H
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