Gene Acid345_1241 details

Gene Information

• Locus tag: Acid345_1241
• Symbol: rplF
• ID: 4072632
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Candidatus Koribacter versatilis Ellin345
• Kingdom: Bacteria
• Replicon accession: NC_008009
• Strand: +
• Start bp: 1519964
• End bp: 1520503
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637983250
• Product: 50S ribosomal protein L6
• Protein accession: YP_590317
• Protein GI: 94968269
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.138167
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 2
• Fosmid unclonability p-value: 0.000825354
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTCGAGAA TTGGTAAGAA GCCGATTGCC GTGCCGAAGG GCGTCACGTT CAACGTGCAG 
GGCGATGTCG TAACCGTGAA GGGGCCGAAG GGCACCGTAT CGAACCACCT GCCGGGCGGC 
GTGAAGCTGG CTCTGGAGGA TGGCAACATT GTCGTGACGC GCGACGACGA GTCGAAGCGC 
GCCATTCACG GCCTGGTCCG CGCGCTGGTG AACAACGCAG TGGAAGGCGT GACCAAGGGC 
TGGACGCGGA ACCTGGAGAT CGTTGGCATT GGTTACCGTG CCGAACTCAA GGGCAAGGGC 
ACGGTGGTGT TCACGCTGGG CTACTCGCAC CCGATCGAAT ATCCGTTGCC GACTGGGATC 
GAAGCGGCGG TGGACGCGAA GCAGACCGCG CTGACGATTA CCGGCATTGA CCGGCAGAAG 
GTCGGCCAGG TTGCGGCGGA AATGCGCGCG CTGCGCCCGC CCGATCCGTA CAAGAACAAG 
GGCGTACGTT ACGCCGGCGA GAAACTGAAG AAGAAGGTCG GCAAGACCGG CGCGAAGTAA 

 

Protein sequence

MSRIGKKPIA VPKGVTFNVQ GDVVTVKGPK GTVSNHLPGG VKLALEDGNI VVTRDDESKR 
AIHGLVRALV NNAVEGVTKG WTRNLEIVGI GYRAELKGKG TVVFTLGYSH PIEYPLPTGI 
EAAVDAKQTA LTITGIDRQK VGQVAAEMRA LRPPDPYKNK GVRYAGEKLK KKVGKTGAK