| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1212 |
|---|
| Symbol | |
|---|
| ID | 4068552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 1497693 |
|---|
| End bp | 1498574 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637983221 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase |
|---|
| Protein accession | YP_590288 |
|---|
| Protein GI | 94968240 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.493871 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATCA AATCCGTAGG TGTAATCGGT TGCGGGCTCA TGGGCTCAGG AATTGCGCAG
GCTGCGGCGA CGGCCGGATT TCCCGTTATA GTTCTCGAAG CCGAGCAGCG TTTTCTCGAC
AGAGGTTTCA CAGGCGTCGA GCGCTCGCTC GCCAAATTCG CGGAGAAGGG AACGATCACG
GAATCGCCCG ATGCGATTCG CGCGCGGCTG AAGGGAACGA CCAACGTCGA AGACCTCGCC
GATTGCGACA TCATCATCGA GGCGATCCTC GAAAACGTTC CCGAGAAACA CAAGATGTAC
GCCGCACTCG AGAAGGTCGC CAAGCCTGAC GCCATCTTCG CCAGCAATAC TTCATCGATC
TCCATCACCG AATTAATGGC GGCGACGAAG CGTCCAGAGC GCTTTATCGG ACTGCATTTC
TTTAATCCCG TGCCGCTCAT GAAACTCGTC GAGGTGATTC GCACGATTGC AACCTCGGAC
GAAGTATTTG AAGCAGCCGT CGACTTCGGC ACGAAGCTCG GCAAAGTGCC GGTGCGCACG
AAAGACTCGA GCGGCTTCAT CGTGAACCGC CTGCTGGTGC CGTATTTGCT CGACGCAATC
CGCGCCTACG AAGAAGGCGT TGGCTCGATT GTCGATATTG ATCAGGCCAT GAAGCTGGGC
TGCGGCTATC CGATGGGCCC GTTCACGCTG CTTGATTTCG TCGGGCTCGA TACGTGCTAC
TACATCACCC ACGTGATGTT CGATGAGTTC CGCGAGAAGC GCTTTGCCGC GCCACCACTC
TTGAAACGGA TGGTGCTGGC AGGCTGGTAT GGGCGCAAAA CTGGCAAGGG TTTCTACGAT
TACACGGATC CGAACAATCC CATCGCAAAT CAAAATCTTT AA
|
|---|
| Protein sequence | MQIKSVGVIG CGLMGSGIAQ AAATAGFPVI VLEAEQRFLD RGFTGVERSL AKFAEKGTIT
ESPDAIRARL KGTTNVEDLA DCDIIIEAIL ENVPEKHKMY AALEKVAKPD AIFASNTSSI
SITELMAATK RPERFIGLHF FNPVPLMKLV EVIRTIATSD EVFEAAVDFG TKLGKVPVRT
KDSSGFIVNR LLVPYLLDAI RAYEEGVGSI VDIDQAMKLG CGYPMGPFTL LDFVGLDTCY
YITHVMFDEF REKRFAAPPL LKRMVLAGWY GRKTGKGFYD YTDPNNPIAN QNL
|
|---|
| |