| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0961 |
|---|
| Symbol | |
|---|
| ID | 4072949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 1218688 |
|---|
| End bp | 1220085 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637982968 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_590038 |
|---|
| Protein GI | 94967990 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCCG TAATTCCAGC AAATGAAGCC GCACGACAGC AGGAACTAAC CTCCTTCCAG
ATTCTCGATA CACCTCCCGA CAGTTCGTTC GACAATCTCG TCGCGCTTGC CGCCGAGATC
TGTGAAGCCC CGATTTCAAC CGTGACCTTC ATAGACAGCG ATCGGCAATG GTTCAAAGCG
AAGCTTGGCG TGGAATCGGA CCAGACGCCG CGCGAACAGA GCTTCTGCGC CCATGCCATC
CTCAAGCCCA ACGAATTCAT GGTGGTGCCC GATGCCGCGA AGGACCCGCG CTTTGAGGAC
AATCCCCTCG TCACCGGCGA GCCGAACATT CGCTTCTATG CGGCAGCGCC GCTGGTATCC
AAGGGACTTG GACTCGGCGC CCTTTGCATC ATCGACCGCC AGCCTCGCAC ATTGAAGCCG
TTCCAGGAGA GTGCGCTGCG GACGCTCGCA TCGCAAGCGG CGCAATTGAT GGAATTGCAC
CGGCAGCGTG CGATGGCCGA GAACCATCGG CGGTTCCTGC ACACCGTGAT GGAGACCTTG
GCGGAGGGCG TGATCGTCCG CGACTCGCAG CGGCGGCTGC TGGCGCACAA CACCATGGCA
TCCGTTCTGC TTGGAACCGA GTTGAAGGAC ATGGTTGGGC AGACGTTTTC AATGCTACAT
TTCAAACCCG TCCAGCCCGA CGGTTTCCCG ATCCCGACCG AAGACTTGCC GTCCTACAAA
GCGCTGGCAA CCGGCGAGCC GCAGCGTAAC GTCATCTTCG GCATCACGCG GCCCAACAAG
ACCGAAATCT GGATCGAGTC GAACGCGAGT GTCCTGAACG ACCCGGTCCA CGGCGAGTGC
GCGGTCATTT CGTTCCGCGA TGTAAGCGAC CGCAAGGCAC TCGAAAAGCA GATCCAGCGG
GATGGCACGA CCGATCCGCT TACCGGGCTG CCCAACCGCG CGGCGTTCCT GAATTACGTC
GGCAAGGCGA TTGCAGCCGC CAGTCGATAC AAGCATCCGA TGAGCGTCTG TGTCGCATCG
CTCGACGATC TGAAAGCTAT GGTTGCGAAA CATGGGCCGC ATGCGGCAGA TTCCGCCCTG
AAACACTTCG GCACCATACT TCGTGCCACC CTGCGTCATG AGGACAGCGT GGCGCGACTG
GCCGGCGATG ATTTCGTCGC GCTCTTCCCT TACGTTGACG CCAACCGCGC ACTGACGAGC
CTGGACCGTT TCAAGTCGAC GCTTGAGAAC GCGCAGTTAC GGCTGCACGA TGGCAAAGAA
ATCACCCTGA CAGGCGCCTG CGGGCTGTCC GATTGGAAGC CGGGAATGAG CGCAGAAGAT
CTTCTGGACT CGGCGCTGAA GGCGTGCGGC GAGGCGAAAG CGAAGGGCCG CAACAGCGTC
GCCGTCGCGG CCGGATAG
|
|---|
| Protein sequence | MPAVIPANEA ARQQELTSFQ ILDTPPDSSF DNLVALAAEI CEAPISTVTF IDSDRQWFKA
KLGVESDQTP REQSFCAHAI LKPNEFMVVP DAAKDPRFED NPLVTGEPNI RFYAAAPLVS
KGLGLGALCI IDRQPRTLKP FQESALRTLA SQAAQLMELH RQRAMAENHR RFLHTVMETL
AEGVIVRDSQ RRLLAHNTMA SVLLGTELKD MVGQTFSMLH FKPVQPDGFP IPTEDLPSYK
ALATGEPQRN VIFGITRPNK TEIWIESNAS VLNDPVHGEC AVISFRDVSD RKALEKQIQR
DGTTDPLTGL PNRAAFLNYV GKAIAAASRY KHPMSVCVAS LDDLKAMVAK HGPHAADSAL
KHFGTILRAT LRHEDSVARL AGDDFVALFP YVDANRALTS LDRFKSTLEN AQLRLHDGKE
ITLTGACGLS DWKPGMSAED LLDSALKACG EAKAKGRNSV AVAAG
|
|---|
| |