Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_0961 |
Symbol | |
ID | 4072949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | - |
Start bp | 1218688 |
End bp | 1220085 |
Gene Length | 1398 bp |
Protein Length | 465 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637982968 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_590038 |
Protein GI | 94967990 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGCCG TAATTCCAGC AAATGAAGCC GCACGACAGC AGGAACTAAC CTCCTTCCAG ATTCTCGATA CACCTCCCGA CAGTTCGTTC GACAATCTCG TCGCGCTTGC CGCCGAGATC TGTGAAGCCC CGATTTCAAC CGTGACCTTC ATAGACAGCG ATCGGCAATG GTTCAAAGCG AAGCTTGGCG TGGAATCGGA CCAGACGCCG CGCGAACAGA GCTTCTGCGC CCATGCCATC CTCAAGCCCA ACGAATTCAT GGTGGTGCCC GATGCCGCGA AGGACCCGCG CTTTGAGGAC AATCCCCTCG TCACCGGCGA GCCGAACATT CGCTTCTATG CGGCAGCGCC GCTGGTATCC AAGGGACTTG GACTCGGCGC CCTTTGCATC ATCGACCGCC AGCCTCGCAC ATTGAAGCCG TTCCAGGAGA GTGCGCTGCG GACGCTCGCA TCGCAAGCGG CGCAATTGAT GGAATTGCAC CGGCAGCGTG CGATGGCCGA GAACCATCGG CGGTTCCTGC ACACCGTGAT GGAGACCTTG GCGGAGGGCG TGATCGTCCG CGACTCGCAG CGGCGGCTGC TGGCGCACAA CACCATGGCA TCCGTTCTGC TTGGAACCGA GTTGAAGGAC ATGGTTGGGC AGACGTTTTC AATGCTACAT TTCAAACCCG TCCAGCCCGA CGGTTTCCCG ATCCCGACCG AAGACTTGCC GTCCTACAAA GCGCTGGCAA CCGGCGAGCC GCAGCGTAAC GTCATCTTCG GCATCACGCG GCCCAACAAG ACCGAAATCT GGATCGAGTC GAACGCGAGT GTCCTGAACG ACCCGGTCCA CGGCGAGTGC GCGGTCATTT CGTTCCGCGA TGTAAGCGAC CGCAAGGCAC TCGAAAAGCA GATCCAGCGG GATGGCACGA CCGATCCGCT TACCGGGCTG CCCAACCGCG CGGCGTTCCT GAATTACGTC GGCAAGGCGA TTGCAGCCGC CAGTCGATAC AAGCATCCGA TGAGCGTCTG TGTCGCATCG CTCGACGATC TGAAAGCTAT GGTTGCGAAA CATGGGCCGC ATGCGGCAGA TTCCGCCCTG AAACACTTCG GCACCATACT TCGTGCCACC CTGCGTCATG AGGACAGCGT GGCGCGACTG GCCGGCGATG ATTTCGTCGC GCTCTTCCCT TACGTTGACG CCAACCGCGC ACTGACGAGC CTGGACCGTT TCAAGTCGAC GCTTGAGAAC GCGCAGTTAC GGCTGCACGA TGGCAAAGAA ATCACCCTGA CAGGCGCCTG CGGGCTGTCC GATTGGAAGC CGGGAATGAG CGCAGAAGAT CTTCTGGACT CGGCGCTGAA GGCGTGCGGC GAGGCGAAAG CGAAGGGCCG CAACAGCGTC GCCGTCGCGG CCGGATAG
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Protein sequence | MPAVIPANEA ARQQELTSFQ ILDTPPDSSF DNLVALAAEI CEAPISTVTF IDSDRQWFKA KLGVESDQTP REQSFCAHAI LKPNEFMVVP DAAKDPRFED NPLVTGEPNI RFYAAAPLVS KGLGLGALCI IDRQPRTLKP FQESALRTLA SQAAQLMELH RQRAMAENHR RFLHTVMETL AEGVIVRDSQ RRLLAHNTMA SVLLGTELKD MVGQTFSMLH FKPVQPDGFP IPTEDLPSYK ALATGEPQRN VIFGITRPNK TEIWIESNAS VLNDPVHGEC AVISFRDVSD RKALEKQIQR DGTTDPLTGL PNRAAFLNYV GKAIAAASRY KHPMSVCVAS LDDLKAMVAK HGPHAADSAL KHFGTILRAT LRHEDSVARL AGDDFVALFP YVDANRALTS LDRFKSTLEN AQLRLHDGKE ITLTGACGLS DWKPGMSAED LLDSALKACG EAKAKGRNSV AVAAG
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