Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_0417 |
Symbol | |
ID | 4068736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | - |
Start bp | 480503 |
End bp | 484006 |
Gene Length | 3504 bp |
Protein Length | 1167 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637982421 |
Product | TonB-dependent receptor |
Protein accession | YP_589496 |
Protein GI | 94967448 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0498154 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATTCTT GCAGTCGAGT GGTCGCGCTC TTGCTGCTGT GCTTTGCCGT GGTTGGCTTC GCCTTTGGGC AGGCTGATAC CGGTCAGGTC ACCGGCGTAG CGACCGACCC ATCCGGAGCT ATCGTGGCCG GCGCCAAAGT CACCATCACC GACGTGAATA CCGGCGCGAC ACGTACATCT ACGACGACCC AGAGCGGGAC GTTCGCATTC ACGAACTTGA AACCTTCTGC GTACGACGTC GTTGTCGAAG CAGAGAAGTT TGCGCGCTTC ACCCGTCGCT TGGATGTCAG CGTCGGCTCG CGAAATGATC TGCAGGCGCA ACTCGCAGTG ACGTCAGCCG GTACAACCGT GGACGTCACC GCCGAAACTG AAGCGGCGCA GGTGAATACC GAATCGCAGA CGTTGTCCAA CGTGGTCACC GCGAAGCAGA TTGCGGAATT GCCAACTCTC ACGCGCAACG CTTATGACCT CGTTGCCACT GCCGGCAACG TGGTGGAAGA CACCACCGAC TTCGTGCGCG GCACTGGTTT CTCGATCAAC GGCCAGCGCT CGGCTTCGAC CGATATCCTG CTCGATGGCG GCGAGAATGT CGATCTCTAT GACGCCGCAG TTGGGCAGAA CGTCCCTCTC GATTCAGTGC AGGAATTCCG CATTGTCACC AGCGACTTCA CGGCGGAGTA CGGCCGCGCA GGCGGCGGGG TCGTAAACGT TGCCACCAAG TCGGGCACCA ACGCTTTCCA CGGTACCGCT TATGACTTCA ACCGGGTTTC GGCTCTCGCC GCCAACTCTT GGGAGAACGA CGCAAACGGC ATCGACAAAG GACATTTCAC ACGCAACCAG TTTGGCTATT CCATCGGTGG TCCGGTGGTG AAGAACAAAC TATTCTTCTT CTCCAGCACC GAGTGGACGC GCGTTCGCAG CACCAACAAC AACATCGCGA CGATCATTGA TCCCGCGTTC CTCGCAGCTC CGGAAGTCAG CGACAACACC AAGGCGTTCT TCCAGGCCTA CGGTGCTCGC AAGGACAACC TGGACGTCCT CGACGTTCAA ACGTGGGCAC AAACGCCACA CACCACCAGC ACAGGGCCGG CCGACTCAAC TCCAACCCTG GACAAAGTTT CCTACCAGAT CGCCGGCAAC TCCGGCGGTG GCGCTCCCCA GAACTCGTAT TCAACGGTCA ATCGCGTGGA TTGGAATGCG ACCGACAAAA CCACAATCTT CGGCCGTTAT GCTCTCGAGA GCCAGGATTA CTTCCCCGGA TACATCAGCT TCAGCCCGTA TTCCGGCTAT GACACTCCGG ACCTTCTCTT CCGTAACAAC GTGCTCATCA ACATGACGCA CGTGTTCAGC CCGAATTTCG TTAGCCAGAG CAAAATTGCT TACAACCGGC TGAACGAATC GCAACCGTTC TCCACTGCGC CGGTTGGCCC GACGCTTTAC TCCAACTATT TCGGCCTGCC CACCATCAAT GGCGGACTGT TGCTCTTCCC CGGTTACTCG CCGAGCACTC CCGGCAACTC GATTCCATAC GGCGGTCCGC AGAACCTCTA CCAGCTTTAC CAGGACCTCT CCTGGACAAA AGGCAAGCAC CAACTCCGCT TCGGAGGCCA GTACATTCAC ACCCGCGACA ACCGCACCTT CGGAGCCTAT GAAGGCGCCG CCGCGTATCT GAATAATGCC TTCGATGTCG GGGATGCCTT CGACCAACTC GTCGCAGGTA ATACCAAGCG CTACCAGGTT GCGGTCGATC CCCAAGGAAA ATTCCCATGT CCTTACACTA CCGATGGCGC TTATCAGGAA CTCGATTCCT GCAAAGTCTC GCTGCCGGTC AGCTCACCCT CGTTCACGCG CCACAATCAC TACAACGACG GCGCGTGGTA TGCACAGGAC ACCTGGAAGT TCACGCCTCG GCTCACTCTG AACCTCGGCC TACGCTGGGA ATACTACGGC GTACAGCACA ACGTGGATAC CAGCCCCGAA TCCAACTTCT ACCTCGGACA GGGCTCAGGC ATTCTCGAAC AAATCCGCAA CGGTTCCGTT CAGCTCGCCG GCCAGGGTCC GACAAGCGGA TTGTGGGCAC CCGACCGCAA TAACTTCGCG CCGCGCGTTG GCTTCGCGTG GGATGTTTTC GGCGACGGGA AAACCGCGAT CCGCGGCGGC TACGGCATCA GTTACGAACG CAACTTCGGC AACGTCACCT TCAACGTAAT TCAGAATCCT CCGGGACAGT ACGTGATGAT CCAGGCTGCC CCGATTTCGG TGGATAACTT CGGTCCTCTC GCACCTGGGA GCGGAGCCAA TCCGTACCTG CGGCCGGGTA GTTTACGCGC GGTAAACCAG AACATTCCGA CCGCATACAC GGAATCCTGG AGCTTCGCAG TTGAACGCCA AGTAATAAAG AACAGCGTTC TCGCGTTCGA ATACTCCGGG GCTCACGGCG TACATCTGTA CGACATCGCC AATATTTCCG GCGCCGGTAT GGGATACGCC TTCTTCGGCG ATCCCGACAG CGTCCGACTC ACTGGCACGA ACCTGCAGTA CTCGGCAATC AACTATCGCT CGGCGAACGG GTTTAATACC TACGGCGGCT TGAATACCCG ATTCACCACC GACAACCTGT TCAACCTCGG TCTTCAGCTG AACTTCAACT GGACCTGGTC TCACTCACTC GATAACCTCA GCAACACGTT CAGTGAGGCG GGCAACGGCC CATTCCAACT TGGTTACGTT CACCCGTTTG ACCCAGTCCT CGACAAGGGC AACTCCGAAT ACGACGCACG CCACCGTTTC GTCGTCAGCG CAGTTTGGCA AGTGCCGTGG GGCAAGAAAG TAAACAACAG CGTGCTTCGG CAAGTTGTGG ACGGCTGGTC ATTGTCGCCG CTGTTCAGCT ACCACACCGG TTATTCCTAC AGCATCTTCG ACGGAACCAA CGCCTTCAAC AACGATGGCC GTTGGATTCC CGGAGCTGCA ACTTCCAGGG ACGGTTCTGC CAATCGCAAC AGCTATGTTG GCGGCGGCGT CTTCAACTAC ATGGGTCTGC CGTGGGATCC CAACAATATG ACTCTCGTGA ACCTCGGTCA AACCACTGCT CCGGGCGCCG TTGCTGGCAC GGGCGTCTCG TGGGGCGATC TGCCGATCAA TCCGGCGACC GGCTTGTCCA GCTGTCCCAC CGTTGGCAGC CTCGTGGGTT GCAGCTACGG TCCAAACACC GATCGTAACC AGTTCGTAGG CCCGGGGAAC CATCAATTCA ACGCGGTCAT CGGAAAGACT TTCCGTCTCT CCGAGCGTTT CAGCATGCAG TTCCGCGGCG AATTCTACAA CGTGTTTAAC AACCACAATT ACTACCTGCT CACTACGAAT GCTGATGTCT TCGGCATGTC GGTAGCAGCG AATGGAGACT CGAGCCTAAG CGCGGGACGG AACATCCAGG CTGTAAAGGG TGGCTACGGT AACGCTCTCG ACGAAACTCG CAACATCCAG CTCGGGCTTA AGCTCATTTT CTAA
|
Protein sequence | MNSCSRVVAL LLLCFAVVGF AFGQADTGQV TGVATDPSGA IVAGAKVTIT DVNTGATRTS TTTQSGTFAF TNLKPSAYDV VVEAEKFARF TRRLDVSVGS RNDLQAQLAV TSAGTTVDVT AETEAAQVNT ESQTLSNVVT AKQIAELPTL TRNAYDLVAT AGNVVEDTTD FVRGTGFSIN GQRSASTDIL LDGGENVDLY DAAVGQNVPL DSVQEFRIVT SDFTAEYGRA GGGVVNVATK SGTNAFHGTA YDFNRVSALA ANSWENDANG IDKGHFTRNQ FGYSIGGPVV KNKLFFFSST EWTRVRSTNN NIATIIDPAF LAAPEVSDNT KAFFQAYGAR KDNLDVLDVQ TWAQTPHTTS TGPADSTPTL DKVSYQIAGN SGGGAPQNSY STVNRVDWNA TDKTTIFGRY ALESQDYFPG YISFSPYSGY DTPDLLFRNN VLINMTHVFS PNFVSQSKIA YNRLNESQPF STAPVGPTLY SNYFGLPTIN GGLLLFPGYS PSTPGNSIPY GGPQNLYQLY QDLSWTKGKH QLRFGGQYIH TRDNRTFGAY EGAAAYLNNA FDVGDAFDQL VAGNTKRYQV AVDPQGKFPC PYTTDGAYQE LDSCKVSLPV SSPSFTRHNH YNDGAWYAQD TWKFTPRLTL NLGLRWEYYG VQHNVDTSPE SNFYLGQGSG ILEQIRNGSV QLAGQGPTSG LWAPDRNNFA PRVGFAWDVF GDGKTAIRGG YGISYERNFG NVTFNVIQNP PGQYVMIQAA PISVDNFGPL APGSGANPYL RPGSLRAVNQ NIPTAYTESW SFAVERQVIK NSVLAFEYSG AHGVHLYDIA NISGAGMGYA FFGDPDSVRL TGTNLQYSAI NYRSANGFNT YGGLNTRFTT DNLFNLGLQL NFNWTWSHSL DNLSNTFSEA GNGPFQLGYV HPFDPVLDKG NSEYDARHRF VVSAVWQVPW GKKVNNSVLR QVVDGWSLSP LFSYHTGYSY SIFDGTNAFN NDGRWIPGAA TSRDGSANRN SYVGGGVFNY MGLPWDPNNM TLVNLGQTTA PGAVAGTGVS WGDLPINPAT GLSSCPTVGS LVGCSYGPNT DRNQFVGPGN HQFNAVIGKT FRLSERFSMQ FRGEFYNVFN NHNYYLLTTN ADVFGMSVAA NGDSSLSAGR NIQAVKGGYG NALDETRNIQ LGLKLIF
|
| |