| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0324 |
|---|
| Symbol | |
|---|
| ID | 4068601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 350987 |
|---|
| End bp | 352690 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637982327 |
|---|
| Product | SSS family solute/sodium (Na+) symporter |
|---|
| Protein accession | YP_589403 |
|---|
| Protein GI | 94967355 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.549745 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCAC TCCTTGCGAG TTTCGTAGCG GACCGGTTGG TGAACCTCTC AAGCACCGAC
CTTGTCATCA TCGTGTTCTA CTTCGCCCTC GTCCTCGCCA TTGGATGGCA GCTGAAGGGC
CAAGCCAAGA CCGGCGAAGA CTTCTTCATG GCCGGACGCG AGATGACCGC GTGGATCGCC
GGCCTTAGTT TCCTCTCCGC AAACCTCGGC TCTCTCGAAC TGATGGGCTG GGCCGGGGCC
GCCTACCAAT ACGGCATCCT CGCCGCCCAC TGGTACTGGA TCGGCGCCAT TCCCGCCATG
ATCTTCCTTG GTCTTGTGAT GATGCCGTTC TATTACATCT CCAAGACGCA CTCGGTGCCG
GGATACTTGA AGCTGCGCTT CGGTGAACCC AGTCGGGCAC TGTCCGCCGT TTCGTTCGCG
TTCATGACGG TGCTGATGAG TGGCATCAAC ATGTATTCGA TGGCGCTGGT GATGAAGGTC
GTTCTCGGCT GGGACATCAA CGTCAGCATC ATAGTTTCGT CCATCACGGT CGCCATCTAC
GTCACCCTCG GCGGCCTGCG TTCCGCCATC TTCAACGAAG TCTTGCAGTT CATTTTGATA
TGGGCAGGTG CGCTTCTCAT CCCCATCATG GGCCTGATCG AAGCCGGCGG CTGGACGAAC
CTCAAGGCGC AAATCACGCG CAATGCCTCA GCGGAGTACA CGCACCTCTG GTCCACGCTC
GGGAAATTCA GCGACAACCC GATGGGCATC AATTGGATCG GCATCGTCTT CGGACTGGGC
GCGATTATTT CGATGGGCTA CTGGACGACG GATTTCCTGG TGGTGCAGCG CGTACTAGCC
GCGAAGGACA TGCGTTCGGC GAAGATGGCC CCGATCATTG GCGCCGCCTT CAAGATGTTG
GTCCCCTTCA TCGTCATTCT GCCCGGACTG CTCGCCCTCG CCGTCCTGCC CATGAAGCTT
GTAGGCGAAA GCCAAGCTAT TGCCACCCAC GGACACAGCT ACAACGAAGT TCTGCCCTTG
ATGCTCGCGC GCTACTGCGG CCCCGGCCTC CTCGGCCTCG GTATCACCGC GCTCATCGCT
GGATTCATGT CCGGCATGGC GGGTAATGTC AGCGCTTTTA CCACGGTGTG GACGTATGAC
ATCTACCGCG CGATGATCAA AAAGGATGCG AGCGATGCCC ATTACGTAAA CATGGGACGT
GCATCAACGA TTGGCGGCGT AATCATCAGC ATTCTCACTG CATACTTCGT GATGAAATTC
GCCAGCATCA TGGATTACGT GCAAGCGCTC TTCAGCTTCT TCATCGCTCC GCTTTTCGCA
ACCGTCGTTC TCGGCATGCT CTGGAAGAGG GCCACGAATG CAGGTGGCTT CTGGGGATTG
CTTGCGGGTA CCGTCTCGTC GGTCGGCATG TACGCCTGGG TGAAGCTCGA TCCCTCGGCG
CTGCGCTACG TCGCAATGTC ACCCGACGCA CAGGCGATGG CGGAGAACAT GTATCGCGCC
CTGTGGTCGT GTCTCATCTG CGCGCTGGTC ACGGTGGTGG TGAGCTACGC CACGAAGCCG
AGGCCCGACG CGGAACTGGT CGGGCTCGTG AAGTCAGTGA CACCAATTCC AAGCGAAGGC
GATGTGCCGA TGTACATGCG TCCTGCGTTC TGGGCCTGCG TAGTCGCCGT CGGATTCATC
ATTCTTCAAA TCATCTTCTG GTAG
|
|---|
| Protein sequence | MSPLLASFVA DRLVNLSSTD LVIIVFYFAL VLAIGWQLKG QAKTGEDFFM AGREMTAWIA
GLSFLSANLG SLELMGWAGA AYQYGILAAH WYWIGAIPAM IFLGLVMMPF YYISKTHSVP
GYLKLRFGEP SRALSAVSFA FMTVLMSGIN MYSMALVMKV VLGWDINVSI IVSSITVAIY
VTLGGLRSAI FNEVLQFILI WAGALLIPIM GLIEAGGWTN LKAQITRNAS AEYTHLWSTL
GKFSDNPMGI NWIGIVFGLG AIISMGYWTT DFLVVQRVLA AKDMRSAKMA PIIGAAFKML
VPFIVILPGL LALAVLPMKL VGESQAIATH GHSYNEVLPL MLARYCGPGL LGLGITALIA
GFMSGMAGNV SAFTTVWTYD IYRAMIKKDA SDAHYVNMGR ASTIGGVIIS ILTAYFVMKF
ASIMDYVQAL FSFFIAPLFA TVVLGMLWKR ATNAGGFWGL LAGTVSSVGM YAWVKLDPSA
LRYVAMSPDA QAMAENMYRA LWSCLICALV TVVVSYATKP RPDAELVGLV KSVTPIPSEG
DVPMYMRPAF WACVVAVGFI ILQIIFW
|
|---|
| |