| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0217 |
|---|
| Symbol | |
|---|
| ID | 4071670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 230198 |
|---|
| End bp | 231949 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637982218 |
|---|
| Product | protein translocase subunit yidC |
|---|
| Protein accession | YP_589296 |
|---|
| Protein GI | 94967248 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.498573 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.628947 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCGGAAA TTAAGAACCC TCAGCAAGAA CCCGGCAGCG AACGCAAGCT GCTGCTCATT
TTCGCGCTCA CATTCATCAT GATCGTGATT GGGCAGACTG TGTTTTTCAA GAACATACCC
AAGAAGCAAG ACGACAAGAA CCAAAAGAGT GCGCCCGTTG CGGCGCAGAC TTCACAACCG
GCTGCTAGCG CTCCGGCGGT CGCGACACCT GCCGTCGCGA AACAGGCGCA GGCCGAGACC
GAGACCGTCG TCGAGAACGC AGTTTCACGA ATCGTCTTCA CCAATCGCGG CGCGCAGGTG
AAGTCGTGGG TGCTGAAGAA CTACAAGGAT GACCACGGCA ATCCGCTGGA ACTGGTGAAC
CGGGAAGCGG CGAAGCAATT CGGGTATCCG CTCTCGTTCT TCACCTATGA CCAAGGCCTC
ACAACGAAGC TCAACGACGC AATGTATGTG GCAAGCGCGA CCGGCAGAAT CGAGGTCCCA
GGCGAGCTGA CGTTTGAGTT CTCCGACGGC GATCTCTCGG CGAAGAAGAC GCTGCGTTTC
ACGAACGGCT ACGTGGTTGG CGTCGAAACC AGCGTTACGC GCGGCGGATC GAACGTCACA
GCGCTTCCGG CATGGCCGAG CGGCTTTGGC GACGACGTGC AGCCGACCTC GTACGCACTG
CAAGCCATCG CGTATGAGAA CAGCGGCGAA GTTGAGCGCC AGACGGGCAA AAAGATCGTC
GGCGGCGCAA CGCTGCGCGG GCCATTCAAC TGGGCGGGCG CGCAGGACCA GTACTTCGCG
GCGCTCTTCC TACCGGACAA TCCGCCGGCG GCGAGCATGG TCACGCTGCA TAACACGCTG
AAGATTCCGG CGGATCTGGA CAAACCCGAT CCGAACAAGA CGCAGCCGGT GGATGTGATC
GGCTCTGCGG TCGGCGACCT GAGCGGGCCA ACGGTGACCC GGCTGTTCGT GGGACCAAAG
GCCCTACACA TCCTTGAGTC GGTGAAGTCG AACGCCGCGC CGGGACAACC GAACGGGCCC
GACTTATCGA AGGTTGTCGA TTTTGGAAAG TATCTCGGCT TCATTGCGAA GCCGTTGTTC
CTGTGGCTGC GCTGGACGCA TGATCACTGG GTGCCGAATT GGGGCTGGTC GATCATCATC
CTGACGGTAA TCATCAACCT GGTGCTGCTG CCGTTGCGAC TGAGCAGTAT GAAGTCTGCG
CTGAAGATGC AGAAGATCCA GCCGCAGATG AAGGCGATCC AGGAAAAGTA CAAGAAGTAC
AAGATGAACG ACCCGAAGCG CGCCGATATG AACACCGAAA TGGCTGCGCT TTACAAGCAA
CACAGCGTGA ACCCGGTGGG TGGCTGCCTG CCGCTGGTCA TCCAGATGCC GTTCCTGATC
GCGTTCTACG GCATGCTGGC GGTAGCGATT GAGCTGCGCC AGGCGAACTG GTTCTGGTTG
CATGATCTTT CGGGACCAGA CCATCTGTAC ATCATCCCGG TACTGATCGT GGCGAGCACG
ATCCTGATGC AGCGCATGAC GCCGCAGGCC GGAATAGACC CCGCGCAGCA GAAGATGATG
ACCATCATGA TGCCGGCGTT CCTGGGCTGG ATCAGCTTGC GTTATGCCTC GGGACTGGGG
CTGTACTGGA TTGTGGGCAA CATCATCGGC TTTGCTCAGC AGTTCATTAT GAACAAGACA
GAGTTGGGGA GAGAGATTGC CGCGGTAAGG GCGAAACAAG CCAACAAGCG GCGCCTGAAA
GGCAAAGAGT AG
|
|---|
| Protein sequence | MAEIKNPQQE PGSERKLLLI FALTFIMIVI GQTVFFKNIP KKQDDKNQKS APVAAQTSQP
AASAPAVATP AVAKQAQAET ETVVENAVSR IVFTNRGAQV KSWVLKNYKD DHGNPLELVN
REAAKQFGYP LSFFTYDQGL TTKLNDAMYV ASATGRIEVP GELTFEFSDG DLSAKKTLRF
TNGYVVGVET SVTRGGSNVT ALPAWPSGFG DDVQPTSYAL QAIAYENSGE VERQTGKKIV
GGATLRGPFN WAGAQDQYFA ALFLPDNPPA ASMVTLHNTL KIPADLDKPD PNKTQPVDVI
GSAVGDLSGP TVTRLFVGPK ALHILESVKS NAAPGQPNGP DLSKVVDFGK YLGFIAKPLF
LWLRWTHDHW VPNWGWSIII LTVIINLVLL PLRLSSMKSA LKMQKIQPQM KAIQEKYKKY
KMNDPKRADM NTEMAALYKQ HSVNPVGGCL PLVIQMPFLI AFYGMLAVAI ELRQANWFWL
HDLSGPDHLY IIPVLIVAST ILMQRMTPQA GIDPAQQKMM TIMMPAFLGW ISLRYASGLG
LYWIVGNIIG FAQQFIMNKT ELGREIAAVR AKQANKRRLK GKE
|
|---|
| |