| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0187 |
|---|
| Symbol | |
|---|
| ID | 4073074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 198895 |
|---|
| End bp | 199362 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637982187 |
|---|
| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| Protein accession | YP_589266 |
|---|
| Protein GI | 94967218 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0994287 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCG TTGGCTTAGG CTTCGACTCC CACGAGTTTC GCGAAGGTAT TCCGCTGCGT
ATTGGCGGAC TCACGATTCC ACATACTCAC GGCTTGAGCG GGCATAGTGA TGGCGATGTG
CTGCTGCACG CCATCACGGA TGCGCTGCTC GGAGCCGTTG CGGCCGGGGA CATAGGAGCG
TTCTTTCCGC CGAGTGATCC GAAGTGGAAG GGCGCGAACT CCGTCGTGTT CATCGAAGAA
GCGATGCGGC ATATTGAGAC GGCGGGCTAT CGCGTCGGCA ATGTGGATTG CTCGCTGGTG
CTGAATGCGC CGAAGATCGG GCCGCATGCG AAAGCAATCC AGGAGAGCGT GGCGAAACTG
CTGAAGATCG AGCCGACGGC GGTGGGCATC AAGGCTAAGA CGCCGGAGGG ATTGAATCTC
GACGGGACTG CCTTGGCGCA TGTGGTGGTG CTGCTGGAGA AGCGCTAA
|
|---|
| Protein sequence | MIRVGLGFDS HEFREGIPLR IGGLTIPHTH GLSGHSDGDV LLHAITDALL GAVAAGDIGA
FFPPSDPKWK GANSVVFIEE AMRHIETAGY RVGNVDCSLV LNAPKIGPHA KAIQESVAKL
LKIEPTAVGI KAKTPEGLNL DGTALAHVVV LLEKR
|
|---|
| |