| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0175 |
|---|
| Symbol | |
|---|
| ID | 4073062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 184763 |
|---|
| End bp | 186985 |
|---|
| Gene Length | 2223 bp |
|---|
| Protein Length | 740 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637982175 |
|---|
| Product | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA |
|---|
| Protein accession | YP_589254 |
|---|
| Protein GI | 94967206 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.249358 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACCC TGCGCCAGCA AATCGCGACA AACGTTCTCT CAGCCACGCG GTATCGCGAC
CTGCTGAACA TCGTCCGCCA GAACCGTCCT AAAGACGATA TCGAGATCGT CAAAAAAGCC
TTCGAGTTCT CCCAGAAGCA CCACGCCGGC CAAACCCGTG CCTCCGGCGA ACCCTACCTC
GTACATCCGT TGGAAGTCGG AATCATTCTC GCCGACATGC GCTTGGACAC CACGGCAATC
GCAGCCGGAC TGCTGCACGA CTCTGTGGAA GATACATCCG TCACGATCGA GGAAATCCAG
GAGCAGTTCG GCGAGCAAGT TGCGCACATC GTTGAAGGCG TAACCAAAAT CAGCCGCATT
GATTTCGCCT CACGCGAAGA AGCGCAGGCG GAGAACGTCC GAAAGATGGT GCTCGCGATG
GTGGACGACA TCCGCGTGGT GCTGATCAAA CTCGCGGACC GCCTGCACAA TATGCGCACC
TTGCAGCACC TCTCACAGGA GCGGCAGGAA AAGATCGCGC GAGAGACGCT GGAGATTTAT
GCGCCCATTG CACACCGTCT CGGGATGGGC CGCGTGCGCG GCGAACTGGA AGACCTTGCG
TTCCCCTATG TCGATCCGAT CGGCTACAAG CGCGTTGAGG AAGCCGTAGA GTCGCGCCGT
AAGAAGGGCG AAGAGTTCCT TGAGCAGGTA AAGGGCGTCA TTACCGCGAA GCTTAAAGAG
AACAGCATTG ATGCTCGCGT AGACAGCCGG ATCAAGCGCC TTTACTCCAT CAATCAGAAG
TTGATTCGCC AGCGCATTGA CGTCGAGCAG GTGTACGACA TGTACGCCCT GCGCATCATT
ACCAAGAGCG TCGTCGATTG CTACTCCATC CTCGGAATCA TCCACAACCT CTGGCGTCCG
GTGCCCGGCC GTATTAAGGA CTTCATCGCG ATGCCGCGGC CGAATTTCTA CCAGTCGTTG
CATACGACGG TGATCGCCGA AAACGGCAAT CCCTTCGAAG TGCAAATCCG CACCGAAGAG
ATGCACAAGC TGGCGGAAGA AGGCATCGCA GCGCACTGGA AGTACAAAGA TGGGCCAATC
TCCGCGAAAG ACGAGCAGCG CCTCGCTTGG CTGCGGCAGG TAGTGGAGTG GCAACGCGAT
GTGCAGGATC CGGGCGAGTT TCTCTCCAGC CTCAAAATCG ATCTCTACCC CGAAGAGGTT
TACACGTTCT CGCCGAAGGG CAAGATCGTC ATTCTCCCGC GCGACGCCAC CCCACTCGAC
TTTGCGTACA CCATCCACAC CGAGGTCGGG CACACCTGCG TCGGCGCCAA GGTGAACGGA
CGTATCGTGC CGCTGCGATA CAAGCTGCGG TCGGGCGATA TCGTCGAGAT CCTTACGCAG
CCGGGACACA CCCCGAGTCG CGATTGGCTC ACCATCGTCA AGTCGCCGCG CTCACGGCAG
AAGATCAAGC ACTGGCTCAA CGTTCACCAG CGCGAACGCG CGATTGAAAT CGGACGCAAG
CTTATTGAAA AAGAAGCACG CAAATATCGC ATTCCGCTGA AGGAGATTGC TGACGAGCAT
TTGGCGAAGA TCGCCAATGA ATACGGGCTT GGTAAGGCCG ATGAGTTGCT CGCGGGCATT
GGCTATGGCA AGTTCTCCGC GCGCAGCATC CTTGCGAAAT TGGCGCCCGC AATCAATCCG
GAGGCACCTG CTCCCAGCGA AGATGAGCCA AAGTCTGGCG GATTTACTAG CGTTGTGCGT
CGCGTGTTTG GCGGGAGCGA TGGTTCAGCC CTCAAGGTCA CAGGCCACGA TGATCTGCTC
GTCTATCGCG CCAAGTGTTG TAACCCGATT CGTGGGGAAG AGATCGTCGG CTACGTGACC
CGCGGCAAGG GCGTGGCGGT GCACTCGCGC AACTGTCCGA ACGTCCACAA TTTGCTTTAT
GAGCCGGAGC GTCGTATCGC AGTGGAGTGG GCGCGTGAAG CCCACCGCGG CTCCGGCGAA
GCAGGCTATC CCGTCAAGAT CACCGTCTTC TGCGATGATC GTCCCGGCAT GCTGAAGCAG
ATCACTTCCA TCATCAGCGA CGCCAACACC AATATCCGCA ATATCGAAGC CCACACCGGC
GATGCCCACG CCACCATCGA TGTCATCATC GATATCGAAG ACCTGAAGCA CCTTGAGCGC
ATGATCACCG GCATCCGCAA GATCCCCGGT GTGCGCGATG TACAGCGCGT GCAGAAGCTT
TAG
|
|---|
| Protein sequence | MATLRQQIAT NVLSATRYRD LLNIVRQNRP KDDIEIVKKA FEFSQKHHAG QTRASGEPYL
VHPLEVGIIL ADMRLDTTAI AAGLLHDSVE DTSVTIEEIQ EQFGEQVAHI VEGVTKISRI
DFASREEAQA ENVRKMVLAM VDDIRVVLIK LADRLHNMRT LQHLSQERQE KIARETLEIY
APIAHRLGMG RVRGELEDLA FPYVDPIGYK RVEEAVESRR KKGEEFLEQV KGVITAKLKE
NSIDARVDSR IKRLYSINQK LIRQRIDVEQ VYDMYALRII TKSVVDCYSI LGIIHNLWRP
VPGRIKDFIA MPRPNFYQSL HTTVIAENGN PFEVQIRTEE MHKLAEEGIA AHWKYKDGPI
SAKDEQRLAW LRQVVEWQRD VQDPGEFLSS LKIDLYPEEV YTFSPKGKIV ILPRDATPLD
FAYTIHTEVG HTCVGAKVNG RIVPLRYKLR SGDIVEILTQ PGHTPSRDWL TIVKSPRSRQ
KIKHWLNVHQ RERAIEIGRK LIEKEARKYR IPLKEIADEH LAKIANEYGL GKADELLAGI
GYGKFSARSI LAKLAPAINP EAPAPSEDEP KSGGFTSVVR RVFGGSDGSA LKVTGHDDLL
VYRAKCCNPI RGEEIVGYVT RGKGVAVHSR NCPNVHNLLY EPERRIAVEW AREAHRGSGE
AGYPVKITVF CDDRPGMLKQ ITSIISDANT NIRNIEAHTG DAHATIDVII DIEDLKHLER
MITGIRKIPG VRDVQRVQKL
|
|---|
| |