| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0115 |
|---|
| Symbol | |
|---|
| ID | 4069490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 123038 |
|---|
| End bp | 124633 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637982115 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_589194 |
|---|
| Protein GI | 94967146 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.385317 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAAATCG TTGTCGCCGA AAAAATTGCC AAAGCCGCCA TTGATCTGTT CAAGCAGGAT
CCCACGTGGA ACGTGGTGAC TCCCGACCAG GTCGCCCAGA AAGAACAACT TCTCGAACAG
CTCAAGGGCG CCGATGCCCT CATCGTCCGC TCGGCCGTCT TCGTGGACGC CGCCATGCTT
GAGCACGCCG ACCAGCTCCG CGTCATCGGA CGCGCCGGCG TTGGCGTCGA CAACATCGAG
CTTGAAGCCG CTACCCGCAA GGGCATCGCC GTGATGAACA CCCCCGGCGC CAATGCCATC
GCCGTCGCTG AGCACACCAT CGGCCTCATG CTCGCGCTCG CCCGCTTCAT CCCCCGCGCC
ACCGAAACCA TGCACGCCGG AAAGTGGGAA AAGAAGTCGT TGCAAGGCAC CGAGCTGCGC
GGCAAAACCC TCGGTATCGT CGGTCTCGGA CGCATCGGCC TGGAAGTTGC GCGGCGCGCA
GCATCGTTTG GCATGACGCT CGTCGCCCAC GATCCCTACG TCTCTCCCGC AATTGCGCAC
GATGCGAAGA TCCGCCTCGC TGATCGCGAC GAAGTGCTTG CAGTTGCGGA TTACATCACG
CTGCACGTTG GGTTGACGCC GCAGACGGCG AACATGATCA ACGCGACAAC GCTCGCCACG
ATGAAGAAGG GTGTGCGCAT TGTGAACTGC GCGCGCGGCG AACTCATTGA CGACGCCGCC
CTCGCGGAAG CCGTGAAGTC CGGCCACGTC GGCGGAGCGG CACTCGATGT CTTTACCGAA
GAGCCGTTGA AGGCATCGCC CTACCATGGC GTGCCCAACG TCATCCTCAC CCCGCACATC
GGCGGCTCCA CTGCCGAAGC GCAAGATGCG GTAGGCGTGC AGATCGCGCA TCAAGTCCGC
GATTACCTGC AACGCGGCGT CGTGCAGAAC GCAGTCAACA TGCCGTCGCT CACCGAGCAG
GAGTACGTCG CGCTGGAGCC ATTCATCACC CTAGGCGAAC GCCTCGGCAG CCTGCTCGCG
CAGCTCGCGG AATCGCGCTT CGAAGAAATC GGCATCCGCT ACACCGGCCC GCTCGCCGAC
TGGAAGACCG AGCTCATCCG CAATGCCAGC ATCAAGGGCA TCCTGCAGCA CACCACCGAC
GAGAGCGTGA ACGTCATCAA CGCCAACTCC GTGGCTGAGA CGCGCGGCAT CCGTGTGCAC
GAGTCGAAGA AGGAGCACCC GTCGAGCGGC GCCGCCGCCA ATGTGCTCGG CCTAACGGTC
ACGACGCCGA AGGGAACGCT CTCTGTACGA GGCACGGTGC TGCATGGCAA TTCGCCGCGC
CTGCTTTCGT TCGACAACAT TGATGTGGAA GCCCCGCTCG AAGGGACGTT GCTGGTCATT
CGCAACCGCG ATATCCCCGG CGTAGTAGGA CGCGTCGGCA CCATCCTCGG CGAGCACGAA
GTCAACATCG CAAACTTCGC GCTAGGCCGT CCCAGCGGCA ACAGCGGCGG CAACGCCATC
GCAGCGGTGC AGGTCGACGG CCCGCTGAAA GAGCCAGTCC TGCAACAGCT ACGCCAGCAG
AAAGCGATCC TGGCTGCGAA TGTAGTGCAG TTCTAG
|
|---|
| Protein sequence | MKIVVAEKIA KAAIDLFKQD PTWNVVTPDQ VAQKEQLLEQ LKGADALIVR SAVFVDAAML
EHADQLRVIG RAGVGVDNIE LEAATRKGIA VMNTPGANAI AVAEHTIGLM LALARFIPRA
TETMHAGKWE KKSLQGTELR GKTLGIVGLG RIGLEVARRA ASFGMTLVAH DPYVSPAIAH
DAKIRLADRD EVLAVADYIT LHVGLTPQTA NMINATTLAT MKKGVRIVNC ARGELIDDAA
LAEAVKSGHV GGAALDVFTE EPLKASPYHG VPNVILTPHI GGSTAEAQDA VGVQIAHQVR
DYLQRGVVQN AVNMPSLTEQ EYVALEPFIT LGERLGSLLA QLAESRFEEI GIRYTGPLAD
WKTELIRNAS IKGILQHTTD ESVNVINANS VAETRGIRVH ESKKEHPSSG AAANVLGLTV
TTPKGTLSVR GTVLHGNSPR LLSFDNIDVE APLEGTLLVI RNRDIPGVVG RVGTILGEHE
VNIANFALGR PSGNSGGNAI AAVQVDGPLK EPVLQQLRQQ KAILAANVVQ F
|
|---|
| |