| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0111 |
|---|
| Symbol | |
|---|
| ID | 4069486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 117202 |
|---|
| End bp | 118698 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637982111 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_589190 |
|---|
| Protein GI | 94967142 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.5367 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.241238 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCC TGCTTTTCAT CTCGGTCCTG CTGATCTCGG CGTGTGGGCT CATCTATGAA
TTGATCGCAG GAACGCTCGC CAGCTATCTG ATTGGCGATT CGGTCTTCCA GTTTTCGACC
ATCATCGGCA GCTACCTGTT TGCCATGGGG ATTGGCAGCG CGCTGTCGCG CTACATCCGC
AGCGGACTGG TGCACCGCTT CATCTGGATC GAACTGATGG TCGGCCTGAT CGGCGGATTT
TCATCGGCGC TGCTCTTCCT TGCCTTCGCC TATACGCAGG CATTCGGCTT GCTGATGTAC
ACGCTGGTGA TCGTCATCGG CGTGCTGTTG GGGCTCGAAA TCCCGCTGCT GATGCGGATC
GTGCGCGAAA AGTATGACTT CCGCGACACC GTGGCGCATG TTCTGACGTT CGACTACATC
GGCGCGCTCG GCGCGTCACT ACTTTTTCCG GTGCTGCTGG TGCCGAAGCT CGGACTGGTG
CGTTCGGCGA TGTTGTTCGG GATCGTGAAC GCGCTCGTGG CGCTGTGGTC CACCTTCCTG
TTCGGCTCGG AATTGGCGAA GCGAACCATG TTGCGGGCGA TGTCGGCGAT TGTCCTGATT
GCGTTGTGCG CGGGCATGGT GAACGCGCGC AAGATCACGG CGGCGGCGGA AGACAACATC
TATGCCGATG AAATCGTGTT CGCGCGCGAC ACGCGCTATC AGCACATCGT GCTCACTCGG
TTCAAAGACG ATCTGCGGTT ATTTCTCAAT TCACACCTTC AGTTCAGCTC GCGCGACGAG
TACCGTTACC ACGAAGCGCT GATCCATCCG GGCCTGTCGG CAGTGCCGGT ACCGCGGCAT
GTGCTGGTGC TCGGCGGTGG CGACGGCCTC GCCGTACGCG AGATTTTGAA GTATCCGCAG
GTCGAGAGCA TCACCCTCGT GGACCTCGAT CCCGAGATGA CCAAACTGTT CAGCACGAAT
CCAATGCTCA CGGCGCTGAA TAAGAAATCG TTTCTCGATC CCAAGGTGAA AGTCATCAAC
GCCGATGCGT TTCCGTGGAT CGACCAAAGC ACGGAGAGCT TCGATTTCAT CGTGATCGAC
TTCCCCGATC CCACCAGCTA TTCGCTCGGC AAGCTCTACA CCACTACGTT CTATCGCGCC
GTCGCGCGCC ACTTGAGCGA ACAGGGATTC ATGGTCGTGC AGAGTACATC GCCAATGTTC
GCTCGCGATT CCTTCTGGTG CATTGCCGAG ACGCTGAAAC AGACGGGCCT GAAGACGTAT
CCGTACCACG TCTATGTGCC ATCGTTCGGC GAGTGGGGCT TTGTTCTGGC CGGCACGCAC
GAATACGAAG CGCCGACGTC GCTGCCGCAA GGCTTGCGCT TCGTCAGCAC CGCTACGCTC
CCCACGCTCT TCCAGTTCCC ACCCGACATG GCGCCGATGA ACGTGCCCGC CAATCACCTC
AACGACCAGG TGCTGGTGCG CATGTACGAC AACGACTGGA AGGACATCAG CCATTGA
|
|---|
| Protein sequence | MAILLFISVL LISACGLIYE LIAGTLASYL IGDSVFQFST IIGSYLFAMG IGSALSRYIR
SGLVHRFIWI ELMVGLIGGF SSALLFLAFA YTQAFGLLMY TLVIVIGVLL GLEIPLLMRI
VREKYDFRDT VAHVLTFDYI GALGASLLFP VLLVPKLGLV RSAMLFGIVN ALVALWSTFL
FGSELAKRTM LRAMSAIVLI ALCAGMVNAR KITAAAEDNI YADEIVFARD TRYQHIVLTR
FKDDLRLFLN SHLQFSSRDE YRYHEALIHP GLSAVPVPRH VLVLGGGDGL AVREILKYPQ
VESITLVDLD PEMTKLFSTN PMLTALNKKS FLDPKVKVIN ADAFPWIDQS TESFDFIVID
FPDPTSYSLG KLYTTTFYRA VARHLSEQGF MVVQSTSPMF ARDSFWCIAE TLKQTGLKTY
PYHVYVPSFG EWGFVLAGTH EYEAPTSLPQ GLRFVSTATL PTLFQFPPDM APMNVPANHL
NDQVLVRMYD NDWKDISH
|
|---|
| |