Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_0030 |
Symbol | |
ID | 4071735 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | + |
Start bp | 27676 |
End bp | 28788 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637982030 |
Product | dihydrouridine synthase TIM-barrel protein nifR3 |
Protein accession | YP_589109 |
Protein GI | 94967061 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.405013 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGAAAAG GCTTCGACAA CCCGATTCAG CACCAGGCGC CCGAAGGTGC CTGTGTCGCC GTGCGCTTCC AGATTGGCAG CGTCGAGATC CGTCCCGCGA CCGTGCTGGC GCCGATGGCA GGGGTGACGG ACACGGTTTT CCGGCGGTTC ATCCGCAACC TGGGCGGCTG CGGACTGATG ATGACGGAGT TCACCTCGGC TGACGGCTTG GCGCGGATGC GCGAGGCAAA GGCCCGGCGC TATCTCACGT TCTACGGCAA CGAGCGCCCG ATTTCGGCAC AGTTGTTCGG CAGCGATGCC GAAACGCTCG CCGACGCGGC AAAGGTCGTG CAGGACCTCG GCTTCGACCT GGTCGACCTG AATTTAGGAT GTCCGTCGAA GCGCGTGGTG AAGTGCAATG GCGGCTCCGG ACTGTTGCGC GACTTGCCGC AGATCAAAGT TATCTTCGAA TCCGTACGCA AGGCGGTGAC GATTCCGTTC ACGGTGAAGT TCCGCGCCGG CTGGAACGAG AAGGAACTCG TTTTCCTTGA GCTGGCGAAA TTGGCGGAGA ATTGCGGGCT GAATGCTGTC GCGATGCATG CGCGAACGCG CGAGCAGGGC TACAGCGGCC AGGCGAACTG GGGATGGATT GCCGACCTGA AGCAGGTGGT GAAAATTCCT GTCATCGGGA ATGGCGATAT CCGTACACCC GAAGATGCGG CGGCGATGGT GGCGAAGACC GGCTGTGATG CCGTGATGAT CGGCCGCTCC GCGGCGTCGA ATCCATGGAT CTTCCGTCAG ATCGAGCAGT ACACCGCCAC CGGACGCTAC GATCTGCCGA CCAACGAAGA TCGCTACGAG ATGATCCGCA TGTACTTCCG CATGCTGATC GAGAACGACA CCCAAGGCGC GGAAGGCAAG ATGAAGCAGT TCGCCTCGTG GTTCACGCAT GGCGTGCCGG GAGGAGGCGT TCTGCGCAAA GCCGTGTACG AAGCGAAGAA GCGCGAGACG ATTCTGGTGG CGGTGGATCA GTTCTTCGAA GCGTTGCTCG CCGGCAAAAT TGCAGCTGCG AGCGAGACGG GGCCGTCACC GAATGATGAG CTGGAGTCAA ATCCGGCGGC AATGACGGGC TAG
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Protein sequence | MRKGFDNPIQ HQAPEGACVA VRFQIGSVEI RPATVLAPMA GVTDTVFRRF IRNLGGCGLM MTEFTSADGL ARMREAKARR YLTFYGNERP ISAQLFGSDA ETLADAAKVV QDLGFDLVDL NLGCPSKRVV KCNGGSGLLR DLPQIKVIFE SVRKAVTIPF TVKFRAGWNE KELVFLELAK LAENCGLNAV AMHARTREQG YSGQANWGWI ADLKQVVKIP VIGNGDIRTP EDAAAMVAKT GCDAVMIGRS AASNPWIFRQ IEQYTATGRY DLPTNEDRYE MIRMYFRMLI ENDTQGAEGK MKQFASWFTH GVPGGGVLRK AVYEAKKRET ILVAVDQFFE ALLAGKIAAA SETGPSPNDE LESNPAAMTG
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