| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0002 |
|---|
| Symbol | |
|---|
| ID | 4070012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 1811 |
|---|
| End bp | 2926 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637982002 |
|---|
| Product | DNA polymerase III, beta subunit |
|---|
| Protein accession | YP_589081 |
|---|
| Protein GI | 94967033 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000194465 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0534413 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATTA CGGTCAGCAA GTTCGATCTG CTCAAGGAAC TCACCGCGAC GCAAGGCGTC
GTCGAGCGCA AGACCACCAT TCCCATCCTT TCCAATTTTC TCTTCGAAGC CGTCGGCGAC
AAGCTGAACA TCACTGCGAC CGATCTTGAT CTCAGTCTTC GGACCGCTTG TGTAACGAAG
GTGAAGAAAG AGGGATCCTG CACCATTCCG GCGCGCAAAC TCTACGACTA CGTGAAGCTG
CTTCCCGATG GCGACATCAC GATCAAGTTG CTGGAGAACC ACTGGGTCAA CATTCGTAGC
GGACGCTCAA ACACCAAGAT GGTTGGCATG GCGCGCTCGA ACTTCCCCAG CTTGCCAGTG
TTTCCGACGA CTGGGATGGT GAAGATTCCT GCCGCCGCGC TACGAACGAT GATTGGTAAG
ACGATTTTCG CGATCTCCAA CGAAGAGTCG CGGTACACAT TGAATGGCGC GCTGATGGTG
CTGAAACCAG AGTCGCTGAT CATGGTTTCG ACCGACGGCC ATCGCCTGGC CCATATCGAG
CGCCAGGGTG GAAAGTTCGA AATCAGCGGC GAGATGAAAA CGCTGGTGCC GAAGAAGGCG
ATGAGCGAGT TGTACTCGCT ATTACAGTCG ACCGAGACCG AAGACATCGA GTTCGCAAAG
GACGAGAGCA CGCTGTTCTT CCGCATCGGC GGACGGTTGC TGACCTCGCG CCAACTCACC
GGCCAATTCC CGAACTACGA AGCTGTGCTG CCGAAGGACA ACGACAAGTC GGTGACAATC
CGGACCGATG AATTCATGGC GGCGATCCTG CGTGTAGCGC AATTTGCGGA CGAACGCTCG
CAGGCAATTA AAGTTCGCCT GGAAAAGGAC GAGCTACGCA TCTCATCTTC ATCCACTGAA
ACCGGCGAGT CGGAAGATTC GATCGTGACC GCGTATACGG GTGAGGTAGT GACCATCGGT
TTCAATTCGC AATACTTGAT TGAGTTCCTG AAGGCCGCTG GTGCGGATGA GGTGAGACTC
GAATTCAAGA ATGCGCAGTC GGCCGGCCAA TTGCGTCCGG AAGCAACGTC AGATGAGTTC
AAGTATCGGT ATGTGGTAAT GCCGATGCGG ATCTGA
|
|---|
| Protein sequence | MEITVSKFDL LKELTATQGV VERKTTIPIL SNFLFEAVGD KLNITATDLD LSLRTACVTK
VKKEGSCTIP ARKLYDYVKL LPDGDITIKL LENHWVNIRS GRSNTKMVGM ARSNFPSLPV
FPTTGMVKIP AAALRTMIGK TIFAISNEES RYTLNGALMV LKPESLIMVS TDGHRLAHIE
RQGGKFEISG EMKTLVPKKA MSELYSLLQS TETEDIEFAK DESTLFFRIG GRLLTSRQLT
GQFPNYEAVL PKDNDKSVTI RTDEFMAAIL RVAQFADERS QAIKVRLEKD ELRISSSSTE
TGESEDSIVT AYTGEVVTIG FNSQYLIEFL KAAGADEVRL EFKNAQSAGQ LRPEATSDEF
KYRYVVMPMR I
|
|---|
| |