| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BCI_0576 |
|---|
| Symbol | rnr |
|---|
| ID | 4056692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Baumannia cicadellinicola str. Hc (Homalodisca coagulata) |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007984 |
|---|
| Strand | - |
|---|
| Start bp | 603138 |
|---|
| End bp | 605387 |
|---|
| Gene Length | 2250 bp |
|---|
| Protein Length | 749 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637981925 |
|---|
| Product | ribonuclease R |
|---|
| Protein accession | YP_589004 |
|---|
| Protein GI | 94676637 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAA ATCCTTTTTT GGCGCACAAT ACAGAAAAAT ATAAGTGCCC AATTCCTAGT
AGGGAATTAA TTCTTATTCA CCTAGCTAAA AGAGAAGTAC CAATAAGCAG CAAGGATTTA
GCACTAGAAC TAAATGTATG TGGCGCAGAG CAATTAGATG GTCTACGCAG ACGTCTACGC
GCCATGAAAA GAGATGGACA ATTAACATTT ACTCACAGAC AATATTCTAT TCTACCTACA
GATAATAATT TACTACGAGG TACAGTTATT GGTCACCGAG ATGGTTTTGG TTTTCTACGG
GTTAGCGGTC GTAAGGAAGA TTTGTATCTT TCAGTAGAAC AGATGAAGAT AGTGATTCAT
GGAGATATAG TAATAGCTGC TCTCTCTCAA GGAGAGCACT ATAATAAAGG GCGCAGAGAA
GCTCGCATTA TACGCGTACT AATACCTAAA AATCAACCAA TAGTTGGTAA ATTTTATGTC
GATACTAATC GTGCTTTTGT CGTACCTGAT GACAGCCGTC TTAGCTTTAA GATAATTATT
CCACCAGCAG ATAGAAATAA TGCTGATGTT GGTTGTCTGG TTGTTGTTCA ATTAATTCAG
CGTCCGAACC GTAATATTAA AGCAATAGGA AAAATAGTTG AAGTCCTAGG TGATCATATA
AATACAAGTA TGGTGGTAGA TATTGCTTTA CGTAGCTATG CACTACCTTA TATATGGCCA
CCAGAAGTAG AAGAACAAGC GGCTACTTTT ACAAAAGAAG TCCCAGAAGT TGTTAAGCGT
AGTCGTGTGG ATTTACGTAT GCTACCACTA GTAACTATTG ATGGGGAAGA AGCACGTGAT
TTTGATGATG CGGTATACTG TGAGAAAAAG AGTAGTGGAT GGCGCTTATG GGTAGCTATT
GCTGATGTTA GCTATTATGT TCGTCCACAT ACACCATTAG ATAATGAAGC CAGAAATCGA
GCTACATCAA TTTATTTTCC ATCTCAAGTT ATTCCAATGC TACCTGAAAT TCTTTCTCAT
AGTTTATGTT CACTGAACCC ACAGGTAGAT CGGTTATGCA TGGTATGCGA AATGACAATT
TCCGCTCAAG GTAAACTTTC TTCCTATAAG TTTTATGAAG CAATAATAAA TTCTAAAGCT
CGTCTAACAT ATAATAATGT CTGGCAAATA TTACAGGGTA ATCAACAATT GTGCACTTAT
TATGCACAAT TAGTTCAGCC ACTAAACAAT TTACATACTA TGTCTCTAAA ATTAGAGCAG
GCAAGGATAC AACGTGGTGG TATCTCCTTT GATACCGAAG AAACTCAGTT TATCTTTAAT
GCAGAACAAC GTATTGAAAG GATTGAGCTA GTAGTACGTA ATGAAGCACA TAAGCTTATT
GAAGAGTGTA TGATATTAGC AAATATTGCC GCTGCACGAT TTATTGAGAA AAACAAAGAG
CCAGCGCTGT ATCGTGTGCA CGATCGTCCT AGTAATGATA ATATAACTTT ACTACGTGCA
ATTTTAGGTA AACGAGGTTT AAACTTAGGA GGAGGTGATC AACCTCAACC TAAGGATTAT
GCTGAAATAA TGAGTGTAGT TTCTCGTAGA ACGGATTACG AAATGTTACG AACTATGCTC
TTACGATCAA TGAAGCAAGC TATCTATGAT CCAGAAAATC GTGGTCATTT TGGTTTAGCT
TTACAGGCTT ATACTCATTT TACTTCACCT ATCCGTCGTT ATTCTGATCT TGTTTTACAC
CGAGCAATAA AATATCTTTT AGGTCGGCAG AATGGTAAAG CAAATGGCCG TTCTACGCCA
TCTGGTGGTT GGCATTCTGA GCTAAAAGAG ATGTTACAGA TTGGCCAGCA TTGTTCGATG
AACGAGCGTC GAGCTGATGA AGCTACCCGT AATGTTACAG ATTGGTTAAA ATGCGATTTT
ATGCAAGAAC ATGTCGGTGA AGTATTCTAC GGTACTATTG CGAATATCAC TTGTTTTGGT
TTTTTCGTGC GCATTAATGG ACTTTTTATT GATGGTTTAG TACATATCTC GTCACTAGAA
AATGACTATT ACCGTTATGA TAATGTTAAT CAGCTACTGA TCGGTGAATC TGGAGGTAAA
ATTTATCGTA TTGGTGATAC AGTAGGAATT CGTGTTGAAG CAATACATAT GAGTGATCGT
AAAATTAACT TTTCACTAAT ATCAACGAGA CAATACCATC ATAAAAATAA CCACCAAATT
AGCAGTAATA AGCTGTTTGT TCGTAGCTAA
|
|---|
| Protein sequence | MSKNPFLAHN TEKYKCPIPS RELILIHLAK REVPISSKDL ALELNVCGAE QLDGLRRRLR
AMKRDGQLTF THRQYSILPT DNNLLRGTVI GHRDGFGFLR VSGRKEDLYL SVEQMKIVIH
GDIVIAALSQ GEHYNKGRRE ARIIRVLIPK NQPIVGKFYV DTNRAFVVPD DSRLSFKIII
PPADRNNADV GCLVVVQLIQ RPNRNIKAIG KIVEVLGDHI NTSMVVDIAL RSYALPYIWP
PEVEEQAATF TKEVPEVVKR SRVDLRMLPL VTIDGEEARD FDDAVYCEKK SSGWRLWVAI
ADVSYYVRPH TPLDNEARNR ATSIYFPSQV IPMLPEILSH SLCSLNPQVD RLCMVCEMTI
SAQGKLSSYK FYEAIINSKA RLTYNNVWQI LQGNQQLCTY YAQLVQPLNN LHTMSLKLEQ
ARIQRGGISF DTEETQFIFN AEQRIERIEL VVRNEAHKLI EECMILANIA AARFIEKNKE
PALYRVHDRP SNDNITLLRA ILGKRGLNLG GGDQPQPKDY AEIMSVVSRR TDYEMLRTML
LRSMKQAIYD PENRGHFGLA LQAYTHFTSP IRRYSDLVLH RAIKYLLGRQ NGKANGRSTP
SGGWHSELKE MLQIGQHCSM NERRADEATR NVTDWLKCDF MQEHVGEVFY GTIANITCFG
FFVRINGLFI DGLVHISSLE NDYYRYDNVN QLLIGESGGK IYRIGDTVGI RVEAIHMSDR
KINFSLISTR QYHHKNNHQI SSNKLFVRS
|
|---|
| |