Gene BCI_0275 details

Gene Information

• Locus tag: BCI_0275
• Symbol: dxs
• ID: 4056487
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Baumannia cicadellinicola str. Hc (Homalodisca coagulata)
• Kingdom: Bacteria
• Replicon accession: NC_007984
• Strand: +
• Start bp: 292087
• End bp: 293958
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637981627
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_588725
• Protein GI: 94676593
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.395507
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTATGC AGATTAAAAG GTATCCCACA TTAGATCTAG CAGACAATCC TATTAAGTTA 
CGTTTACTAC CGAAAGAAAG TCTATTAACA CTATGTGATG AACTACGTCA ATTTTTACTA 
ACTAGCGTTA GTGGTTCTAG TGGCCATTTT GCATCAGGGC TTGGTACAGT AGAGCTAACC 
GTAGCTTTAC ATTATGTCTA TAACACTCCA TTTGATAATG TTATTTGGGA TGTAGGTCAT 
CAAGCCTACC CGCATAAGAT TCTTACAGGT AGAAGAGAGT GTATTGCTAC GATACGTCAA 
CGTAATGGCC TACATCCATT TCCTTGGCGT GAAGAAAGTG AATACGACAT TTTATCAGTA 
GGACATTCCT CTACTTCTAT TAGTGCTGGT CTTGGTATGG CTGTTGCAGC TACATATGAA 
GGTATTGGTA GAAAAACAGT GTGTGTTATT GGTGATGGTG CCATGACTGC TGGTATGGCA 
TTTGAAGCTC TAAATCACGC TGGTGACATT AAATCTGACT TACTTGTAAT ACTGAATGAC 
AATAAAATGT CTATTTCTAG GAACGTGGGT GCGTTGAATA ACCATCTTGC TCAAATTTTA 
TCTGGTAAAT TATATTTAAG AATAAATGAA AGTAGCAAAA AAGCACTACA TGGAATGCCT 
TATCTAAAAG AACTGGCAAA AAGAACCAAA GAACAAATAA AAAACATAAT AGTACCAAAC 
TGTACGTTAT TTGAAGAGCT CGGTTTTAAT TATATTGGTC CTGTAGATGG ACATGATGTA 
CAAGGTATGG TACATATTCT AAAAAATATG CGTTGTATGA AAGGTCCTCA ATTACTACAT 
ATAATTACCC AAAAAGGACG CGGTTATGCT CCAGCAGAGA AAGATCCAAC CACTTGGCAT 
GCGGTACCTA AGTTTGATCC TGCAATAGGT CAGCTACCTT ACCAAAATAT TAGTAACTAT 
CCTACTTATT CAGATGTTTT CGGCGACTGG TTATGTAATG CTGCTACTAG TAATAAAAAG 
TTAATCGCTA TAACACCAGC AATGCGTGAG GGATCTGGTA TGGCAAAATT TGCTAACCAA 
TTTCCACAAC AATATTTTGA TGTAGCTATT GCTGAGCAGC ATGCAGTTAC TTTTGCTGCT 
GGGTTAGCTA TTAGTGGGTA TAAGCCAGTA GTAGCAATTT ATTCTACTTT CCTACAGCGT 
GCATATGATC AAGTAATCCA TGATGTTGCC ATACAGAAAC TTCCGGTGCT ATTTGCGATT 
GATAGAGGCG GTGTAGTAGG CGCTGATGGA CAAACTCATC AAGGTGCTTT TGACCTTTCC 
TATCTCCGTT GTGTGCCCAA TATGGTAATT ATGACACCAA GTGATGAGAA CGAGTGCAGA 
CTCATGTTAC ATACTGGGTA TCATTATAAT AACGGTCCTA GCGCCGTCCG ATATCCACGT 
GGTAATGGTA TCGGTGTAGA ATACAGCCTA CTTAGAATAT TACCACTAGG TAAAGCTATA 
GTATGCCGCC AAGGTACAAA GATTGCTATT TTAAATTTTG GTACTTTACT TACACAGGCC 
AAGAAAGTTG CTAAGACCTT CGATGCAACT TTGGTAGATA TGCGTTTTGT TAAGCCTCTA 
GATATAGAAT TAATTAATCA GCTTGCTATA AGCCATCAAG CATTAGTAAC GCTAGAAGAA 
AACGCCGTAA TAGGGGGAGC TGGAAGTGGT GTTAATGAAT ATCTAATGCG TCAAAGGTTA 
TTAGTGCCTG TTTTAAATAT TGGTTTGCCT GATTATTTTA TTCCACAAGG TAGCCAGGAG 
GAGATACGTG CTGAGCTTAA ACTAGACAGT GATGGAATTA TGGAGCAAAT TAAGCAATGG 
CTAGCTAGGT AA 

 

Protein sequence

MSMQIKRYPT LDLADNPIKL RLLPKESLLT LCDELRQFLL TSVSGSSGHF ASGLGTVELT 
VALHYVYNTP FDNVIWDVGH QAYPHKILTG RRECIATIRQ RNGLHPFPWR EESEYDILSV 
GHSSTSISAG LGMAVAATYE GIGRKTVCVI GDGAMTAGMA FEALNHAGDI KSDLLVILND 
NKMSISRNVG ALNNHLAQIL SGKLYLRINE SSKKALHGMP YLKELAKRTK EQIKNIIVPN 
CTLFEELGFN YIGPVDGHDV QGMVHILKNM RCMKGPQLLH IITQKGRGYA PAEKDPTTWH 
AVPKFDPAIG QLPYQNISNY PTYSDVFGDW LCNAATSNKK LIAITPAMRE GSGMAKFANQ 
FPQQYFDVAI AEQHAVTFAA GLAISGYKPV VAIYSTFLQR AYDQVIHDVA IQKLPVLFAI 
DRGGVVGADG QTHQGAFDLS YLRCVPNMVI MTPSDENECR LMLHTGYHYN NGPSAVRYPR 
GNGIGVEYSL LRILPLGKAI VCRQGTKIAI LNFGTLLTQA KKVAKTFDAT LVDMRFVKPL 
DIELINQLAI SHQALVTLEE NAVIGGAGSG VNEYLMRQRL LVPVLNIGLP DYFIPQGSQE 
EIRAELKLDS DGIMEQIKQW LAR