Gene BCI_0197 details

Gene Information

• Locus tag: BCI_0197
• Symbol: rimM
• ID: 4056672
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Baumannia cicadellinicola str. Hc (Homalodisca coagulata)
• Kingdom: Bacteria
• Replicon accession: NC_007984
• Strand: -
• Start bp: 210022
• End bp: 210549
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 637981551
• Product: 16S rRNA processing protein RimM
• Protein accession: YP_588654
• Protein GI: 94676597
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCGGTTA ATCCTGTGGT TTTAGGTACC ATAAGCTCCG CTTATGGCAT AAGCGGTTGG 
CTAAACATTA TTTCATTTAC GCAAAATGCA GCAAGTATTT TTGAGTATCA GCCATGGTTT 
ATTAAAAAGT TAAATACATG GCTTGATGTT ATACTAGATG AATGGAAATA TAATTATCAT 
AATAAGTTAA TAATTAAAAT TAATAGCATT GAAAATAGGG AAGCCGCACA GCTCTTTGCT 
AATTGTAATA TTATAGTTGA TGCTTCGCAG TTACCAACTC TATCCGATGG TGATTACTAC 
TGGAAAGATC TGATAGGTTG TCAAGTAGAA ACAATAAACA GTTATCAACT TGGTAAAGTT 
ATTGACTTAA TCGAGACTGG CTCAAATGAT GTGATGGTTG TTCAAGCAAA TCAACAACAT 
TCTACTAAAA TCAATGAGCT TTTAATCCCA TTTATATATG GTCAAGTAAT TAAAAATGTT 
GATCTCGCAA CTCACATAAT TAAAGTAGAC TGGGACCCAG AATTTTAA 

 

Protein sequence

MPVNPVVLGT ISSAYGISGW LNIISFTQNA ASIFEYQPWF IKKLNTWLDV ILDEWKYNYH 
NKLIIKINSI ENREAAQLFA NCNIIVDASQ LPTLSDGDYY WKDLIGCQVE TINSYQLGKV 
IDLIETGSND VMVVQANQQH STKINELLIP FIYGQVIKNV DLATHIIKVD WDPEF